NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss120035131           
Submitter
HandleSNP500CANCER
Submitter SNP IDCGFID_14
RefSNP(rs#)rs78836193
Submitted Batch IDSNP500CANCER_02_19_08
Submitted DateFeb 24, 2009
Publication CitedN.D.
First entry to dbSNPFeb 24 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodROCHE/454 NEXT-GENERATION SEQUENCING
Ascertainment Samplesize152
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss120035131|allelePos=101|len=201|taxid=9606|alleles='A/C'|mol=Genomic
 TGAAACAGAA TGCAAAGCAA CAATTATCTG CTAAATGGAA AATTAAAGGC ATAAATAAAG
 TCAAAGCTCA AACCAGTGAG GCAAAAATCA CACGGGCTCC
 M
 ATTTCCTTTT GCTGCTTGTA GCTGCAAGTT TGAAAGGAAG GACACATGGG GATAGTAAAA
 ATATGAGAGC AATGGACCAC GTTTAATCGA TAGTGAAGGC

  Submitted Frequency for ss120035131 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
Pop1
MULTI-NATIONAL
152A/A=0.98684198
A/C=0.01315800
SNP500CANCER_02_19_08SNP500CANCER


  dbSNP summary of Genotypes for ss120035131 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
Pop1
MULTI-NATIONAL
152152A=0.99342108
C=0.00657895A/A=0.98684210
A/C=0.01315789
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss120035131 back to top
There is no individual genotype data for ss120035131.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement