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Submitted SNP(ss) Details: ss120035139           
Submitter
HandleSNP500CANCER
Submitter SNP IDCGFID_22
RefSNP(rs#)rs58809953
Submitted Batch IDSNP500CANCER_02_19_08
Submitted DateFeb 24, 2009
Publication CitedN.D.
First entry to dbSNPFeb 24 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodROCHE/454 NEXT-GENERATION SEQUENCING
Ascertainment Samplesize154
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss120035139|allelePos=101|len=201|taxid=9606|alleles='C/T'|mol=Genomic
 GCCATCATTC TGGACGCACA GCCAAACTAA ACTTCTCTTT CCCAAACACT TCCTGCCCTC
 TTACAACACT GCCTTCTCAC AGCGTTCTCT TTGCCAGAAA
 Y
 GCTTCTATTC CTCTTCTATC AAACTCTCAT TCACCTTTCC AGATTCAGCC TCCTCGGTGT
 GTCCTCTGTG AAGCTTTGCC TAAGACAGAC ACACGCATGC

  Submitted Frequency for ss120035139 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
Pop1
MULTI-NATIONAL
154C/C=0.87013000
C/T=0.12987000
SNP500CANCER_02_19_08SNP500CANCER


  dbSNP summary of Genotypes for ss120035139 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
Pop1
MULTI-NATIONAL
154154C=0.93506491
T=0.06493507C/C=0.87012988
C/T=0.12987013
Pr(chiSq=0.047,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss120035139 back to top
There is no individual genotype data for ss120035139.

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