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Submitted SNP(ss) Details: ss12137608           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDchr11.NT_033903.5_3728967
RefSNP(rs#)rs633578
Submitted Batch IDWI-WGS-200306-C
Submitted DateJul 04, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 4 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWI-WGS-200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S213P61534RH2.T0position:578quality:34

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12137608|allelePos=1000|len=5975|taxid=9606|alleles='A/T'|mol=Genomic
 AGCTACAGCC TCCTATTCAC ACTCCCTGCC TCCATTCCAC ACTACCCTAG GGAATACCTG
 GATTCCCCAC TCTGTCCACA TATTGTAGCA TTCATTCTCT CTCTCTCTCA TCCTCTCACC
 TGTGTGGTTT ATGGGTGTGA TAGAGTTTTT AAGATTATTA TAAACTAGCA AAAAGAAAAA
 AAAACTCAGA GAGAGAGAGA gagaaagatc tattcagggc ctttgcccat ttttaatttg
 gattatttgt tttcttgcta ttatgtttct tattatttta aatattaacc tcttttcaga
 tgtatggttt gcaaagattt tcttccattc cataggttgc ctcttcttcc tgtcgattgt
 ttcctttgct gtatagaaac tattctagtt tgatgtaatc ccatttgtct attttggcct
 tcgttatctg tgctttagga attccatcca aaaatcattg ccccaactaa tatcaggaag
 cttttctcct gtgttttttt ctagtggttt tgcagtctca ggtcctacct ttaagtcctt
 aaaccatttt tggttgattt ttatacatgg tgtgagataa ggtctaattt caattttcca
 aatgtggata tgcagttttt tcaacagcat ttattaaaga gactgttcac tcctcattca
 tgtgttcttg gcaactttgt caaaaatcaa tcaccttaaa tgcatggatt tatttctgga
 tgttctattc tgttccatta cttcatgttt ctgtttttat gctagtacca tcctgttttc
 attactattg cttcatagta cattttgaag ttaggtagtg tgatatctgc agctttgttc
 ttgttgctta tgattgattt tgttcttagg gatcttttgt gattacacat acattttttg
 gtgttttata ttcctttgaa gaatgtcatt ggtatttaga taggaattgc attgaatctg
 taaatcactt gggccattat tgtcattttg acagtatta
 W
 ttctcccaat ctgtaaataa ggaatatttt tctatttatt tgtgttttct tcacttcctt
 catttatgtt taataatttc cactatataa gtcttttacc accttgttta agtttactcc
 taagtattta tgttttgtat ctatgcaaac aggatgattt tctttgtcag atctttcact
 gttagtgtat agaatcacca ctgatttatg tatgttcatt ttgtatcttg ccacattact
 gaattgctta ctagttttaa cctagtttgc tgcagtcttt aggatgtttt atatgtagga
 ccatgctata tgcaaacagg aatatattta gctacttcct ttccaatttg gatgcttttt
 atttttttct cttgcctaat tgctctgagt agaacttcca ttaatgcatt gaatagaagt
 cgtgagggtg agcatccttg ccttgtcctt aatcttagaa aaatgttttt cacttttcac
 cattaagtgt aatgttagct gtgggtttat catatattgt ctttattgta tgagctacat
 ttcttctata cctcatttgt tgagagttca taatcaggaa atcatggtga gctttatcaa
 atgctttttc tgcatctatc aagtgatcat tggattttgt tttttattct gttaatgtgg
 gatttcacat ttatagaact gtacgttgaa ctatctttgc atccctatgt taaagcccac
 tgtatcatga ttaatgacct ttttgacatg ctgttgagat tagtttgcta gtattaatat
 tttattgatg cacctatgtt catcagtgct attgcctatt attttcattt gttgaagtgt
 ccctatcttt gttatcaggg ttaacaacaa ctttgtaaaa taactttgga agtattccct
 cttgttcgat ttcttggaag ggttttagaa agattgacat tagttcttct ttaaatgttt
 ggtggaattc agcagtgaag ccataaggtc ctgggcttct ctttgatgga atattttttt
 tacttattta acgtccttac tcattattgg tttgtttaga ttttcaattt cttcatcttg
 gtgggtttta tgcatctagg aatttactca tttattctag attattccaa tttgttggca
 tataattggt cataatagtc tattctgatc ctttgtgata taagttgtaa tgtctccttt
 ttatgtatga ttttattttt atcttttttt ctttttttcc cctcgtctgg ataaaggttt
 gtcaatcttc tttatctttt caaaagatca aatttcaggg tttttcttta atgtttttat
 agtttctatt taatttaact gctctgatct ttattttttc cttcattcta ttaactatgg
 gcttagtttg ttctttttat agttccgtga agtgtaacat ttggttgttt aagatctttc
 ttttttttca atgtaaatgt tttgaagcat cttacaagtt ttggtatgtt gagtttccat
 ttttgctggt ctcagcataa attttaattt ccattttaat ttcctcttta atccatctgt
 tgttcagaag catgctgttt aattttcatg tatttgtgaa ttttctaaaa tgtatccagt
 tattaatttc tattttcatg ccattgttat ctggaatgat aaataatatg atttcagtat
 tcttaaattt attatgacat gctttgtgtc ctaacatttg ttctCTagca tttcctgtaa
 gacagctctg atggtgataa actccctcaa tttttgtttg cctggcaaag tttttaatct
 ctccattatt tgcaaaaaca aacaaacaaa caaaaaaaaa cagattttgt tgggaacagt
 atttttggtt gacactgttt ttgtatagaa cattgaatat atcattccat gctctcagcc
 gataagcttc tgctcataaa tctgctgtta gccttattgg aactccctta tatgttattt
 gcttcttttc tccttttgtt ttcagaatct tcctttcctt tgatttttga tagtttaatt
 aaaatatatc ttgtattctt gaagggattg aatcttatca aacactttta atgttcctat
 acctgtatat ttctctttcc ccagacttgg aaagtattct gctattattt catcagataa
 gatttctctt cttatctgtt tctgttctct ttctgggaca cacatgatat gtacattgga
 tctcttactg atattccata attaccatag gatttattca ctttttctca tttttttcct
 tttgtgtctc tgactcagta atttcaaatg atctgtcttt gagctcattg attctttatt
 ctagtcgatc aaatctgctt tcaaagaact ctatgaaatt ttcagttcaa ccattgtgtc
 ctttatgtcc agcatttctt ttttatgatt tctctttgtt gaactttcta ttttgttcat
 gtattatttc tctgattctt tttagtcatc tatctgtgtt ctcttgaagc tcactgtgta
 ttttaaagac aattatttta gattcattgt cagaaagttc ataagccttt atttctttag
 ggtcagctat tggttattct tttttttttc tatggtggta tcatttttct ctgatagttc
 ttgatattta ggctgtgcat tggtgtctgc acatttgaaa aacaggaaag ttattctagt
 ctttgtatac tggctttatc tggaaacacc ctttcccagt catccagcaa ttcttggtag
 ggtgtctgtt gtggtctgca ggtgaacttg ttgctgaagt cttcaggcag gctagcctgg
 tgcctgtgtc agctggtggt aggcttggtt cctgggtctg tagagtgggg cctaaatcct
 ggatccactg ggtggatatt atgcatatgt ggggatgaac ataaaaccaa tgtctataaa
 ggcaggcatg cagcctgtac caataggggc tggactgaag catgggtcca caggggctga
 cacagctctg atgtgggcat tgatcctgtg tctgcaggtg ctagctaggt tctggaatgg
 gtctaatgtc tgggcctact gggatgagcc tggaatctga gtccatgggg actggcctgg
 aactggtgca ggattagagc ctgcaactgg agaaatggac ctaggatatt ggtagatggg
 ggctgacctt gagcctgagt cttcagagat ggtcctagag ccttcatcca tgatggccag
 cctagcatca ggatctactg aactcagcct gtatgctggg tttgctagag cacagctgga
 ccctgagttt attggatcct gggtcacaaa aaccagcctg aagcctgaag ctggcctagg
 gctgggatgg ggtggggcca gtctagagcc tgagaccata ggtggtagac tggtgcctgt
 agccacagag gctggcctag aagctgggga atggcctgga ggttgggtgt atgagttctg
 gcctagaacc taggtcttca gggctggcat ggagactagg tccacaaagg cttgcctggg
 tcctaggact gtaggaactg ctctggaacc gaggtctaca gaaactgtcc tagatactgg
 gtctgtgggc actagcccaa tactggagtc aactgtgatg agcctgaacc ctgggtctgc
 tggaggatgg gaacatagga actggccctg gagagtaggg tggcagaaac tggcctagcc
 ctaggcaggc ctggagcctg agtctgcaga tgcttgccag atacctagct aagagataag
 gctagggctg ccaacctgga actggggttg gcctgaatcc tggatttttg tgagccaacc
 tagttttggg ctagtctggc acctagggtg gacttggagt ctgtgaccac gggggctagc
 ctggcgctag gcagtcctag aatctgtatc cacaggggtc agcctggagg ttggatctat
 ggacactggc ctggtgacta aagttgcagg ggccagcctt gttctggggc tggtctgaaa
 ccttgagttg tggaggccat catgattctg ggagcagtct ggagcatgaa gccactaggg
 ctggcctggt cccagggacc atctgacacc tatggcactg gggtagatct ggcattaaat
 taagatgtac ccagaaacca agtccaccag gcaagcctgg agcctgtcct gtgagatctg
 gtttggctca gtctgcaggt accagcctgg agtgtggggc cataggggca tacctattac
 tgtatttcac tgaagcaggc tctgtgtttt tggtccaaac caaagttcag tgctcacttc
 ccttttcttc ttcaacacaa aggttgcctg tctgtgtgct ctgctgctct ggtacctggt
 tccatgcctg tgggtggggt gacacaggta atgtaaactt gttcttccta tgctcttcaa
 ttcatctttt cttatttctc tgctacacga agattctgtt atctttcacc tggtatcctt
 agttcttgtt aaggtattct tgtgcataga tagttgttta aattgatgtt tttctgagga
 taagtgttag aaagtcccat tctgacattt tgctgatgtc TAGTTGCACA GCATCCAGTC
 AGATTTCTAA ATAATGATTT TCAAAGTGCC TCAGCAGCAT CAGAGGCAGT ACTCCTGCTA
 ATTTGGAAAG AACGATGGCA GATCTTATGT TAAGTGATCT TATCAAACAC ACACATATAT
 ACACACAATA ataacaataa atagagcaga caaaactttt ggaggtgatg aatatgttta
 tggcataggt tgtgttgatg gtttcatgag tatgtattca tctctatctt catcaaggtt
 tacacatgaa acacatacag ctttttctat gtcagtcata ccacaataaa gtagttctgc
 aaaaaaaAGG AAAGTTAAAC GCAATAGAGG AAAACTACTG TTGGCCTCTT TCTTC

  Submitted Frequency for ss12137608 back to top
There is no frequency submission for ss12137608.


  dbSNP summary of Genotypes for ss12137608 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-HCB
EAST ASIA
8888T=0.82954544
A=0.17045455T/T=0.75000000
A/T=0.15909091
A/A=0.09090909
Pr(chiSq=8.420,df=1)
=0.005
Genotype
Freq.
HapMap-JPT9090T=0.94444442
A=0.05555556T/T=0.91111112
A/T=0.06666667
A/A=0.02222222
Pr(chiSq=5.985,df=1)
=0.020
Genotype
Freq.
HapMap-CEU120120T=0.96666664
A=0.03333334T/T=0.93333334
A/T=0.06666667
Pr(chiSq=0.005,df=1)
=1.000
Genotype
Freq.
HapMap-YRI120120T=0.58333331
A=0.41666666T/T=0.40000001
A/T=0.36666667
A/A=0.23333333
Pr(chiSq=3.623,df=1)
=0.100
Genotype
Freq.

  Submitted individual genotype for ss12137608 back to top
There is no individual genotype data for ss12137608.

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