Submitter | Handle | SC_SNP | Submitter SNP ID | chr1.NT_004487.15_4814122 | RefSNP(rs#) | rs6425370 | Submitted Batch ID | CHR20_NA11321_200306 | Submitted Date | Jul 14, 2003 | Publication Cited | [1] A linkage disequilibrium map of human chromosome 20 [2] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP [3] SSAHA: A Fast Search Method for Large DNA Databases | First entry to dbSNP | Jul 14 2003 12:00:00:000AM |
| Resource Links | GenBank Accession | NT_004487
| Submitted Gene Name | N.D | Submitted Gene ID | N.D. | Submitted SNP Synonyms | N.D | Submitted linkout | N.D |
| Assay | Species | Homo sapiens | Molecular Type | Genomic | Method | CHR20_NA11321_200306 | Ascertainment Samplesize | 2 | Population | N.D. |
| Allele | Observed Allele | C/T | Ancestral Allele | N.D. | Allele Origin | N/A | SNP Class | SNV | CpG Code | c/t_g |
| | Variation | Frequency Submission | N.D. | Genotype Summary | N.D. | Genotype Submission | N.D. | Haplotype | N.D. |
|
Comment | sequence:20SNP45081-952g02.q1cposition:79quality:45 |
>gnl|dbSNP|ss12568717|allelePos=1468|len=8822|taxid=9606|alleles='C/T'|mol=Genomic TTACTAAATT TAACCAGCAG TTCAACTATT ACCATAAATC AGTTTTAGAG TATTTCTGCA
CTCCGATAAG ATCACTCATT TGGCATCCAC CATCACAGGC AGTCTCTATT CCTGTCTGTC
TCTATCACTA ATTTCTACTC TAACCTTTAT TATTTCCTTC CTTCTGCTTG TCTTCAGTTA
Gctttgttat tctttttaaa gacagacact taaggataca caattctcta tcaacactgc
tttggctgat accacaaatt gtgatatgat gtgtttccat tttcattcag tttaaaatcc
ttttacattt cctttgttat ttcttctttg actaatggtt atttagtaat gtgtcatgta
atttccaaat acttgcagat gtctcaaagt aactattgtt gatttttaat ttaattccat
tttggtcaga aaactgtttt gtatgtcttc aatcatttta aatttattga cagaaaactg
ttttgtatgt cttcaagcat tttaaattta ttgacttatt tttagtctta aatatggtgt
cccctggaga ctgttactaa cacttgcttg agaagaatgt gcatgcttct actgttggct
gaagtggtct ttggatgtct gttatgtcag attgacaatg ttattcaagt cttctaaaac
tctgccaatt ttctgtccag tttttctatg aaatatcaaa agtggagtat ttttcaacaa
cttcagtcaa aatatctgtt tttcccttaa atatcacaga ttttcttttc atatatctac
aaaaagtttg ttttgaggtg tgttgataat tgatgtatct tttcactatt gattctttta
ccattataaa atgtctttgt ttctagtact gatttctact ctaagtatat tctgttcgac
ctaaatatag ccattctacc atttttcttg actactactt acatggtata tctttttcca
tcctgttact ttaacctatt tgtgtctgtg aatctaaagt ctatctcttg tagacagcat
aaagctggat tctaattttt ttttttttgt aaacccattc tgccaatccc tGAATGTTAC
AACATTCAAC atacttacat ttaatataat tattaatagg ttgcacatct gaaatcaaaa
aatcccaaat ccttgctttt ggagtgccaa catttcaatc aaagctccaa atgcttcttc
attggagcat ttcagatttt ggatttgaga tgctgaacag taagtacaat aatacatact
taacaatgga gatacattct gagaaatgta tcattcagca atttcatcac tgtgtgagca
tacagtgtac tttcacaaac ctagatggta tagactacta cacacttagg ttatgtggaa
tagcctattg tgctcctatg ctacaaacct atgtatcatg ttactgtact gaatgctgta
ggaaactgta acaatggtaa atattta
Y
gtatctaaat atagaaaagc tacagtaaaa ataagatata aaaggtaaaa aatggtacac
acccatacag gggacttatg atgaatggag tttgcaggac tgaaaattgt tttgggtgag
ttagtgagtg gtaaatgaac atgaaggcct aagacgttaa cagtatacct aggctacact
aaatttactg taaaaaagtg ttctcccttc agaaataaat caaccttacc ttacagtgat
tttctgactt tataaactta aaaaattttt aaagcttttt gactcttgta ataacactta
gcttaaaaca catacattgt acagctggac aaaagtattt cctttttaca tttccttata
agttaaaaaa ttaaaatagg aaaaagcttt ttaaactttt ttgttaaaaa ctaagaaaca
gaaagttagc ctaggtctac acagggtcag gataatcaat atcactgttt tcacctccac
gttttgtctc actgaaaagt cttcaagggt aatgatatgc atagagatgt catcttctct
gataacagta cctttttctg gaatgtctcc tgaagggcct gcctgaggct gttgtatagt
aacttaaaaa aacaagtgta agaagtacag tctataataa tggtaaaaag taaataataa
acaagtatat agttatttat tatctttatc aagtattgtg tagtatacgt aatcgtatgt
gctagacttt tTGAACATtt ttaatttttt ttgagtatta tagttggtat atacacttat
gtggaatatg agatgttttg atacaggcat gcaatgcata ataatcacat catggagaat
ggcgcaccta cctcaagcat ttatcctttg tgttacaatc taattataca ttttcagtta
tttaaaaatg tacaatGgga ggtggaggca agatggccaa ataggaacag ctccagtcta
cagctcccag agtgagcgac gcagaagacg ggtgattttg catttccatc tgaggtacca
ggttcatctc actagggagt gccagacagt gggtgcagga gagtgggtgc agcgcaccgt
gcgcgagcca aagcagggtg aggcattgcc tcactcggga agcgcaaggg gtcagggagt
tccctttcct agtcaaagaa aggagtgaca gacggcacct ggaaaattgg gtcactccca
ccctaatact gcgctttacc gacaggctta aaaaatggcg gaccaggaga ttatatcccg
cacctggctc ggagggtcct acgcccacgg agtctcgctg actgcaagca cagcagtctg
agatcaaact gcaaggcggc agcgaggctg ggggaggggc acctgccatt gcccaggctt
gcttaggtaa acaaagcagc tgggaagctc gaactggatg gagcccacca cagctcaagg
aggcctgcct gcctctgtag gctccacctc tgggggcagg cacagacaaa aagacagcag
taacctctgc agacttaaat gtccctgtct gacagctttg aagagagcag tggttctccc
agcatgcagc tggagatctg agaacgggca gactgcctcc tcaagtgggt ccctgacccc
tgacccccaa gcagcctaac taggaggcac cacccagtag gggcaaactg acacctcaca
ccgccgggta ctcctctgag acaaaacttc cagaggaacg atcagagaac aggacttgcg
gttcacgaaa agccgctgtt ctgcagccac cgctgctggg acccaggcaa acagggtctg
gagtggacct ctagcaaact acaacagacc tgcagctgag ggtcctgtct gttagaagga
aaactaacaa acagaaagga catccacacc aaaaacccat ctgtatatca ccaccatcaa
agaccaaaag tagataaaac cacaaagatg gggaaaaaac aaagcagaaa aactggaaac
tctaaaaagc agagtgcctc tcctcctcca aaggaacgca gctcctcacc agcaacggaa
caaagctgga tggagaatgg ctttgacgag ttgagagaag aaggtttcag atgatcaaac
tactctgagc tacaggagga aacttaaacc aaaggcaaag aagttgaaaa ctttgaaaaa
aatttagacg aatgtataac tagaataacc aatacagaga agtgcttaaa ggagctgatg
gagctgaaag ccaaggctcg agaactacgt gaagaatgca gaaccctcag gagccgatga
gatgaactgg aagaaagggt atcagtgatg gaagatgaaa tgaatgaaat gaagcgagaa
gggaagttta gagaaaaaag aataaaaaga aatgagcaaa gcctccaaga aatatgcgac
tatgtgaaaa gaccaaatct acgtctgatt ggtgtacctg aaagtgatgg ggagaatgga
accaagttgg aaaacactct gcaggatatt atccaggaga acttccccaa tctagcaagg
caggccaact ttcagattca ggaaatatag agaacgccac aaagatactc ctcgagaaga
gcaactccaa gacacataat tgtcagattc accaaagttg aaatgaagga aaaaatgtta
agggcagcca gagagaaagg tcgggttaac cacaaaggga agcccatcag actaagaggg
gatctctggg cagaaactct acaagccaga agagagtggg ggccaatatt caacattcct
aaagaaaaga attttcaacc cagaatttca tatccagcca aactaagctt cataagtgaa
ggagaaataa aatactttac agacaaacaa atgctgagag aatctgtcac caccaggcct
gccctaaaag agctcctgaa ggaagcacta aacatggaaa ggaacaaccc ataccagcca
ctgcaaaatc atgccaaatt gtaaagccca tcgaggctag gaagaaactg catcaactaa
cgagcaaaat aaccagttaa catcataatg acaggatcaa attcacacat aacaatatta
actttaaagg taaatggact aaatgctcca atgaaaagac acagactggc aaactggata
aagagtcaag acccatcagt gtgctgtatt caggaaaccc gtctcacgtg cagagacaca
cataggctca aaataaaagg atggaggaag atctaccaag caaatggaaa acaaaaaaag
gcaggggttg caatcctagt ctctgataaa acagacttta aaccaacaaa gatcaaaaca
gacaaagaag gccattacat aatggtaaag aaatcaattc aacaagaaga gctaactatg
ctaaatatat atgcacccaa tacaggagca cccagattca taaagcaagt cctgagtgac
ctacaaagag acttagactc ccacacaata ataatgggag actttaacac gccactgtca
acattagaca gatcaatgag acagaaagtc aacaaggata tccaggaatt gaactcagct
ctgcaccaag cagacttaat ggacatctac agaactctcc accccaaatc aatagaatat
acattttttt cagcaccaca caacacctat tccaaaattg accacatagt tggaagtaaa
gctctcctca gcaaatgcaa aagatcagaa attataacaa actgtctctc agaccacagc
gcaatcaaac tagaactcag gattaagaaa ctcactaaaa accgctcaac tacatggaaa
gtgaacaact tgctcctgaa tgactaccgg gtacataacg aaatgaaggc agaaataaag
atgttctttg aaaacaacaa gaacaaagac acaacatacc agaatctctg ggacacattc
aaagcagtct gtagagggaa atttatagca ctaaatgctc acaagacaaa gcaggaaaga
tccaaaattg acaccctaac atcacaatta aaagaactag aaaagcaaga ccaaacacat
tcaaaagcta gcagaaggca aaaaataatt aaaatcagag cagaactgaa ggaaatacag
acacaaaaaa cccttcaaaa aaattaatga atccaggagc tggttttttg aaaggatcaa
caaaattgat agaccactag caagactaat aaagaagaaa agagagaaga atcaaataga
tgcaataaaa aatgataaac gggatatcac caccgatccc acagaaatac aaactaccat
cagagaatac tacaaacacc tctacacaaa taaacttgaa aatctagaac aaatggataa
attcctcgac acatacaccc tcccaagact aaaccaggaa gaaattgaat ctctgaatag
accaataaca ggctctgaaa ttgtggcaag aatcaatagc ttaccaacca aaaagagtcc
aggaccagat ggattcacag ccgaattcta ccagaggtac aaggaggaac tggtatcatt
ccttctgaaa ctattccaat caacagaaaa agagagaatc ctccctaact cattttatga
ggccagcatc atcctgatac caaagcctgg cagagacaca accaaaaaag agaattttag
accaatatcc ttgatgaaca ttgatgcaaa aatcctcaat aaaatactgg caaaacgaat
ccagcagcac atcaaaaagc ttatccacca tgatcaagtg ggcttcatcc ctgggatgca
aggctggttc aaaacaggca aatcaataaa tgtaatccag catataaaca gaaccaaaga
caaaatccac atggttacct caatagatgc agaaaaggcc tttgacaaaa ttcaacaacc
ctttgtgcta aaaactctca ataaattagg ttttgatggg atatatctca aaataataag
agctatctat gaccaacccg cagccaatat catactgaat gggcaaaaac tggaagcatt
ccctttgaaa actggcacaa gacagggatg ccctctctca ccactcctct tcaacatagt
gttggaagtt ctggccaggg caattaggca ggagaaggaa ataaagggta ttcaattagg
aaaagaggaa gtcaaattgt ccctgtttgc agatgacatg attgtatatc tagaaaaccc
catcgtctca gcccaaaatc tccttaagct gataagcaac ttcagcaaag tctcaggata
caaaatcaat gtacaaaaat cacaagcatt cttatacacc aataacagac aaacagagag
ccaaatcatg agtgaactcc cattcacaac tgcttcaaag agaataaaat atctaggaat
ccaacttaca agggacatga aggacctctt caaggagaac tacaaaccac tgctcagtga
aataaaagag gatacaaaca aatggaagaa cattccatgc tcatgggtag gaagaatcaa
tatcctgaaa atggccatac tgcccaaggt aatttataga ttcaatgcca tccccatcaa
gctaccaatg actttcttca cagaattgga aaaaactact ttcaagttca tatggaacca
aaaaagagcc cacatcgcca agtcaatcct aagccaaaag aacaaagctg gaggcatcac
actacctgac ttcaaactat actacaaggc tacagtaacc aaaacagcat ggtactggta
ccaaaacaga gatatagatc aatggaacag aacacagtcc tcagaaataa tgccgcgtac
ctacaactat ctgatctttg acaaacctga caaaaacaag caatggggaa aggattccct
atttaataaa tggtgctggg aaaactggct agccatatgt agaaagctga aactggatcc
cttccttaca ccttatacaa aaatcaattc aagatggatt aaagacttaa atgttagacc
taaaaccaaa aaaccctaga agaaaaccta ggcaatacca ttcaggacat aggcatgggc
aaggacttca tgtctaaaac accaaaagca atggcaacaa aagccaaaat tgacaaatgg
gatctaatta aactaaagag cttctgcaca gcaaaagaaa ctaccatcag agtgaatagg
caacctacaa aatgggagaa aattttcaca acctactcat ctgacaaagg gctaatatcc
agaatctaca atgaactcaa acaaatttac aagaaaaaaa caaacaaccc catgaaaaag
tgggcgaagg gaatgaacag acacttctca aaagaagaca tttatgcagc caaaaaacac
atgaaaaaat gctcatcatc actggctatc agagaaatgt aaatcaaaac cacaatgaga
taccatctca caccagttag aatggcaatc attaaaaact caggaaacaa caggtgctgg
agaggatgtg gagaaatagg aacactttta cactgttggt gggactgtaa actagttcaa
ccattgtgaa agtcagcgtg gcaattcctc agggatctag aactagaaat accatttgac
ccagccatcc cattactggg tatataccca aaggactata aataatgctg ctataaagac
acatgcacac attatgttta ttgcggcact acttacaata gcaaagactt ggagccaacc
caaaagtcca tatgtaacta acctgcacaa tgtgcacatg taccctaaaa cttagagtat
aattaaaaaa aaaaaaAAAA AAAAAAAAAa agaaaatgtg gcacatatac accatggaat
actatgcagc cataaaaaat gatgagttca tgtcctttgt agggacatgg atgaaattgg
aaatcatcat tctcagtaaa ctatcacaag aacaaaaaac caaacaccac atattctcac
tcataggtgg gaattgaaca atgagaacac atggacacag gaaggggaac atcacactct
ggggactgtt gtggggtggg gggagagggg agggatagct ttaggagata tacctaatgc
taaatgacga attaatggat gcagcacacc agcatggcac atgtatacat atgtaactaa
cctgcacatt gtgcacatgt accctaaaac ttaaagtata ataataataa aaTTaaaaaa
agagaaaaaa aagaaaaaaa aaTAGAACCA TGGATTAACA GGCATTCAGA AAATGTTAAA
AAATAATTAT CTTCTGTGAA TGGAAATATA TTTAAAAACT AAATCTGTAT ATAGCATTTC
AGGACTTCTG CAAATTATGA AATCTTTCAT CTAGTACCAG GGTTATTACA TCCATTTAGG
ATACTCACAG ATAGTTCATA ATGTACAATA GTCC
There is no frequency submission for ss12568717.
No sufficient data to compute Hardy-weinberg probability for ss12568717.
There is no individual genotype data for ss12568717.
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