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Submitted SNP(ss) Details: ss12568717           
Submitter
HandleSC_SNP
Submitter SNP IDchr1.NT_004487.15_4814122
RefSNP(rs#)rs6425370
Submitted Batch IDCHR20_NA11321_200306
Submitted DateJul 14, 2003
Publication Cited[1] A linkage disequilibrium map of human chromosome 20
[2] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[3] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 14 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR20_NA11321_200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:20SNP45081-952g02.q1cposition:79quality:45

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12568717|allelePos=1468|len=8822|taxid=9606|alleles='C/T'|mol=Genomic
 TTACTAAATT TAACCAGCAG TTCAACTATT ACCATAAATC AGTTTTAGAG TATTTCTGCA
 CTCCGATAAG ATCACTCATT TGGCATCCAC CATCACAGGC AGTCTCTATT CCTGTCTGTC
 TCTATCACTA ATTTCTACTC TAACCTTTAT TATTTCCTTC CTTCTGCTTG TCTTCAGTTA
 Gctttgttat tctttttaaa gacagacact taaggataca caattctcta tcaacactgc
 tttggctgat accacaaatt gtgatatgat gtgtttccat tttcattcag tttaaaatcc
 ttttacattt cctttgttat ttcttctttg actaatggtt atttagtaat gtgtcatgta
 atttccaaat acttgcagat gtctcaaagt aactattgtt gatttttaat ttaattccat
 tttggtcaga aaactgtttt gtatgtcttc aatcatttta aatttattga cagaaaactg
 ttttgtatgt cttcaagcat tttaaattta ttgacttatt tttagtctta aatatggtgt
 cccctggaga ctgttactaa cacttgcttg agaagaatgt gcatgcttct actgttggct
 gaagtggtct ttggatgtct gttatgtcag attgacaatg ttattcaagt cttctaaaac
 tctgccaatt ttctgtccag tttttctatg aaatatcaaa agtggagtat ttttcaacaa
 cttcagtcaa aatatctgtt tttcccttaa atatcacaga ttttcttttc atatatctac
 aaaaagtttg ttttgaggtg tgttgataat tgatgtatct tttcactatt gattctttta
 ccattataaa atgtctttgt ttctagtact gatttctact ctaagtatat tctgttcgac
 ctaaatatag ccattctacc atttttcttg actactactt acatggtata tctttttcca
 tcctgttact ttaacctatt tgtgtctgtg aatctaaagt ctatctcttg tagacagcat
 aaagctggat tctaattttt ttttttttgt aaacccattc tgccaatccc tGAATGTTAC
 AACATTCAAC atacttacat ttaatataat tattaatagg ttgcacatct gaaatcaaaa
 aatcccaaat ccttgctttt ggagtgccaa catttcaatc aaagctccaa atgcttcttc
 attggagcat ttcagatttt ggatttgaga tgctgaacag taagtacaat aatacatact
 taacaatgga gatacattct gagaaatgta tcattcagca atttcatcac tgtgtgagca
 tacagtgtac tttcacaaac ctagatggta tagactacta cacacttagg ttatgtggaa
 tagcctattg tgctcctatg ctacaaacct atgtatcatg ttactgtact gaatgctgta
 ggaaactgta acaatggtaa atattta
 Y
 gtatctaaat atagaaaagc tacagtaaaa ataagatata aaaggtaaaa aatggtacac
 acccatacag gggacttatg atgaatggag tttgcaggac tgaaaattgt tttgggtgag
 ttagtgagtg gtaaatgaac atgaaggcct aagacgttaa cagtatacct aggctacact
 aaatttactg taaaaaagtg ttctcccttc agaaataaat caaccttacc ttacagtgat
 tttctgactt tataaactta aaaaattttt aaagcttttt gactcttgta ataacactta
 gcttaaaaca catacattgt acagctggac aaaagtattt cctttttaca tttccttata
 agttaaaaaa ttaaaatagg aaaaagcttt ttaaactttt ttgttaaaaa ctaagaaaca
 gaaagttagc ctaggtctac acagggtcag gataatcaat atcactgttt tcacctccac
 gttttgtctc actgaaaagt cttcaagggt aatgatatgc atagagatgt catcttctct
 gataacagta cctttttctg gaatgtctcc tgaagggcct gcctgaggct gttgtatagt
 aacttaaaaa aacaagtgta agaagtacag tctataataa tggtaaaaag taaataataa
 acaagtatat agttatttat tatctttatc aagtattgtg tagtatacgt aatcgtatgt
 gctagacttt tTGAACATtt ttaatttttt ttgagtatta tagttggtat atacacttat
 gtggaatatg agatgttttg atacaggcat gcaatgcata ataatcacat catggagaat
 ggcgcaccta cctcaagcat ttatcctttg tgttacaatc taattataca ttttcagtta
 tttaaaaatg tacaatGgga ggtggaggca agatggccaa ataggaacag ctccagtcta
 cagctcccag agtgagcgac gcagaagacg ggtgattttg catttccatc tgaggtacca
 ggttcatctc actagggagt gccagacagt gggtgcagga gagtgggtgc agcgcaccgt
 gcgcgagcca aagcagggtg aggcattgcc tcactcggga agcgcaaggg gtcagggagt
 tccctttcct agtcaaagaa aggagtgaca gacggcacct ggaaaattgg gtcactccca
 ccctaatact gcgctttacc gacaggctta aaaaatggcg gaccaggaga ttatatcccg
 cacctggctc ggagggtcct acgcccacgg agtctcgctg actgcaagca cagcagtctg
 agatcaaact gcaaggcggc agcgaggctg ggggaggggc acctgccatt gcccaggctt
 gcttaggtaa acaaagcagc tgggaagctc gaactggatg gagcccacca cagctcaagg
 aggcctgcct gcctctgtag gctccacctc tgggggcagg cacagacaaa aagacagcag
 taacctctgc agacttaaat gtccctgtct gacagctttg aagagagcag tggttctccc
 agcatgcagc tggagatctg agaacgggca gactgcctcc tcaagtgggt ccctgacccc
 tgacccccaa gcagcctaac taggaggcac cacccagtag gggcaaactg acacctcaca
 ccgccgggta ctcctctgag acaaaacttc cagaggaacg atcagagaac aggacttgcg
 gttcacgaaa agccgctgtt ctgcagccac cgctgctggg acccaggcaa acagggtctg
 gagtggacct ctagcaaact acaacagacc tgcagctgag ggtcctgtct gttagaagga
 aaactaacaa acagaaagga catccacacc aaaaacccat ctgtatatca ccaccatcaa
 agaccaaaag tagataaaac cacaaagatg gggaaaaaac aaagcagaaa aactggaaac
 tctaaaaagc agagtgcctc tcctcctcca aaggaacgca gctcctcacc agcaacggaa
 caaagctgga tggagaatgg ctttgacgag ttgagagaag aaggtttcag atgatcaaac
 tactctgagc tacaggagga aacttaaacc aaaggcaaag aagttgaaaa ctttgaaaaa
 aatttagacg aatgtataac tagaataacc aatacagaga agtgcttaaa ggagctgatg
 gagctgaaag ccaaggctcg agaactacgt gaagaatgca gaaccctcag gagccgatga
 gatgaactgg aagaaagggt atcagtgatg gaagatgaaa tgaatgaaat gaagcgagaa
 gggaagttta gagaaaaaag aataaaaaga aatgagcaaa gcctccaaga aatatgcgac
 tatgtgaaaa gaccaaatct acgtctgatt ggtgtacctg aaagtgatgg ggagaatgga
 accaagttgg aaaacactct gcaggatatt atccaggaga acttccccaa tctagcaagg
 caggccaact ttcagattca ggaaatatag agaacgccac aaagatactc ctcgagaaga
 gcaactccaa gacacataat tgtcagattc accaaagttg aaatgaagga aaaaatgtta
 agggcagcca gagagaaagg tcgggttaac cacaaaggga agcccatcag actaagaggg
 gatctctggg cagaaactct acaagccaga agagagtggg ggccaatatt caacattcct
 aaagaaaaga attttcaacc cagaatttca tatccagcca aactaagctt cataagtgaa
 ggagaaataa aatactttac agacaaacaa atgctgagag aatctgtcac caccaggcct
 gccctaaaag agctcctgaa ggaagcacta aacatggaaa ggaacaaccc ataccagcca
 ctgcaaaatc atgccaaatt gtaaagccca tcgaggctag gaagaaactg catcaactaa
 cgagcaaaat aaccagttaa catcataatg acaggatcaa attcacacat aacaatatta
 actttaaagg taaatggact aaatgctcca atgaaaagac acagactggc aaactggata
 aagagtcaag acccatcagt gtgctgtatt caggaaaccc gtctcacgtg cagagacaca
 cataggctca aaataaaagg atggaggaag atctaccaag caaatggaaa acaaaaaaag
 gcaggggttg caatcctagt ctctgataaa acagacttta aaccaacaaa gatcaaaaca
 gacaaagaag gccattacat aatggtaaag aaatcaattc aacaagaaga gctaactatg
 ctaaatatat atgcacccaa tacaggagca cccagattca taaagcaagt cctgagtgac
 ctacaaagag acttagactc ccacacaata ataatgggag actttaacac gccactgtca
 acattagaca gatcaatgag acagaaagtc aacaaggata tccaggaatt gaactcagct
 ctgcaccaag cagacttaat ggacatctac agaactctcc accccaaatc aatagaatat
 acattttttt cagcaccaca caacacctat tccaaaattg accacatagt tggaagtaaa
 gctctcctca gcaaatgcaa aagatcagaa attataacaa actgtctctc agaccacagc
 gcaatcaaac tagaactcag gattaagaaa ctcactaaaa accgctcaac tacatggaaa
 gtgaacaact tgctcctgaa tgactaccgg gtacataacg aaatgaaggc agaaataaag
 atgttctttg aaaacaacaa gaacaaagac acaacatacc agaatctctg ggacacattc
 aaagcagtct gtagagggaa atttatagca ctaaatgctc acaagacaaa gcaggaaaga
 tccaaaattg acaccctaac atcacaatta aaagaactag aaaagcaaga ccaaacacat
 tcaaaagcta gcagaaggca aaaaataatt aaaatcagag cagaactgaa ggaaatacag
 acacaaaaaa cccttcaaaa aaattaatga atccaggagc tggttttttg aaaggatcaa
 caaaattgat agaccactag caagactaat aaagaagaaa agagagaaga atcaaataga
 tgcaataaaa aatgataaac gggatatcac caccgatccc acagaaatac aaactaccat
 cagagaatac tacaaacacc tctacacaaa taaacttgaa aatctagaac aaatggataa
 attcctcgac acatacaccc tcccaagact aaaccaggaa gaaattgaat ctctgaatag
 accaataaca ggctctgaaa ttgtggcaag aatcaatagc ttaccaacca aaaagagtcc
 aggaccagat ggattcacag ccgaattcta ccagaggtac aaggaggaac tggtatcatt
 ccttctgaaa ctattccaat caacagaaaa agagagaatc ctccctaact cattttatga
 ggccagcatc atcctgatac caaagcctgg cagagacaca accaaaaaag agaattttag
 accaatatcc ttgatgaaca ttgatgcaaa aatcctcaat aaaatactgg caaaacgaat
 ccagcagcac atcaaaaagc ttatccacca tgatcaagtg ggcttcatcc ctgggatgca
 aggctggttc aaaacaggca aatcaataaa tgtaatccag catataaaca gaaccaaaga
 caaaatccac atggttacct caatagatgc agaaaaggcc tttgacaaaa ttcaacaacc
 ctttgtgcta aaaactctca ataaattagg ttttgatggg atatatctca aaataataag
 agctatctat gaccaacccg cagccaatat catactgaat gggcaaaaac tggaagcatt
 ccctttgaaa actggcacaa gacagggatg ccctctctca ccactcctct tcaacatagt
 gttggaagtt ctggccaggg caattaggca ggagaaggaa ataaagggta ttcaattagg
 aaaagaggaa gtcaaattgt ccctgtttgc agatgacatg attgtatatc tagaaaaccc
 catcgtctca gcccaaaatc tccttaagct gataagcaac ttcagcaaag tctcaggata
 caaaatcaat gtacaaaaat cacaagcatt cttatacacc aataacagac aaacagagag
 ccaaatcatg agtgaactcc cattcacaac tgcttcaaag agaataaaat atctaggaat
 ccaacttaca agggacatga aggacctctt caaggagaac tacaaaccac tgctcagtga
 aataaaagag gatacaaaca aatggaagaa cattccatgc tcatgggtag gaagaatcaa
 tatcctgaaa atggccatac tgcccaaggt aatttataga ttcaatgcca tccccatcaa
 gctaccaatg actttcttca cagaattgga aaaaactact ttcaagttca tatggaacca
 aaaaagagcc cacatcgcca agtcaatcct aagccaaaag aacaaagctg gaggcatcac
 actacctgac ttcaaactat actacaaggc tacagtaacc aaaacagcat ggtactggta
 ccaaaacaga gatatagatc aatggaacag aacacagtcc tcagaaataa tgccgcgtac
 ctacaactat ctgatctttg acaaacctga caaaaacaag caatggggaa aggattccct
 atttaataaa tggtgctggg aaaactggct agccatatgt agaaagctga aactggatcc
 cttccttaca ccttatacaa aaatcaattc aagatggatt aaagacttaa atgttagacc
 taaaaccaaa aaaccctaga agaaaaccta ggcaatacca ttcaggacat aggcatgggc
 aaggacttca tgtctaaaac accaaaagca atggcaacaa aagccaaaat tgacaaatgg
 gatctaatta aactaaagag cttctgcaca gcaaaagaaa ctaccatcag agtgaatagg
 caacctacaa aatgggagaa aattttcaca acctactcat ctgacaaagg gctaatatcc
 agaatctaca atgaactcaa acaaatttac aagaaaaaaa caaacaaccc catgaaaaag
 tgggcgaagg gaatgaacag acacttctca aaagaagaca tttatgcagc caaaaaacac
 atgaaaaaat gctcatcatc actggctatc agagaaatgt aaatcaaaac cacaatgaga
 taccatctca caccagttag aatggcaatc attaaaaact caggaaacaa caggtgctgg
 agaggatgtg gagaaatagg aacactttta cactgttggt gggactgtaa actagttcaa
 ccattgtgaa agtcagcgtg gcaattcctc agggatctag aactagaaat accatttgac
 ccagccatcc cattactggg tatataccca aaggactata aataatgctg ctataaagac
 acatgcacac attatgttta ttgcggcact acttacaata gcaaagactt ggagccaacc
 caaaagtcca tatgtaacta acctgcacaa tgtgcacatg taccctaaaa cttagagtat
 aattaaaaaa aaaaaaAAAA AAAAAAAAAa agaaaatgtg gcacatatac accatggaat
 actatgcagc cataaaaaat gatgagttca tgtcctttgt agggacatgg atgaaattgg
 aaatcatcat tctcagtaaa ctatcacaag aacaaaaaac caaacaccac atattctcac
 tcataggtgg gaattgaaca atgagaacac atggacacag gaaggggaac atcacactct
 ggggactgtt gtggggtggg gggagagggg agggatagct ttaggagata tacctaatgc
 taaatgacga attaatggat gcagcacacc agcatggcac atgtatacat atgtaactaa
 cctgcacatt gtgcacatgt accctaaaac ttaaagtata ataataataa aaTTaaaaaa
 agagaaaaaa aagaaaaaaa aaTAGAACCA TGGATTAACA GGCATTCAGA AAATGTTAAA
 AAATAATTAT CTTCTGTGAA TGGAAATATA TTTAAAAACT AAATCTGTAT ATAGCATTTC
 AGGACTTCTG CAAATTATGA AATCTTTCAT CTAGTACCAG GGTTATTACA TCCATTTAGG
 ATACTCACAG ATAGTTCATA ATGTACAATA GTCC

  Submitted Frequency for ss12568717 back to top
There is no frequency submission for ss12568717.


  dbSNP summary of Genotypes for ss12568717 back to top
No sufficient data to compute Hardy-weinberg probability for ss12568717.


  Submitted individual genotype for ss12568717 back to top
There is no individual genotype data for ss12568717.

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