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Submitted SNP(ss) Details: ss12568733           
Submitter
HandleSC_SNP
Submitter SNP IDchr1.NT_004668.15_1989139
RefSNP(rs#)rs8179271
Submitted Batch IDCHR20_NA11321_200306
Submitted DateJul 14, 2003
Publication Cited[1] A linkage disequilibrium map of human chromosome 20
[2] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[3] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 14 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR20_NA11321_200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 11
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:20SNP45081-1080a11.q1cposition:229quality:33

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12568733|allelePos=773|len=2596|taxid=9606|alleles='G/A'|mol=Genomic
 ACCTGTAGTA ACCTCTCTGA ACGCTCCAAC AGTGCCTTCT TGTGTGAGAT CACACGTTAA
 TATTTAGTTT GGCAGTTCTG CTAGTTTGAC ATCCAGGAGT TTCTTCTCCT TCACTGGTAC
 AGCCGACTCC ATCTTGGGGT CCTGGTCTGA TAAAAACTTT TAAAATGAGG TTTCAggctg
 ggcgcagtgg ctcatgccta taaatcccaa cactttgggc gactgaggca ggaggattac
 ttgaggccag gagttcaaga ccagcctggt taacatagca agacccccat ctctacaaaa
 aataagaaaa attagccagg ccatggtggc atgtccagga gtttgaggct accgtgagcc
 atgatcacac accactgcac tccagcctgg gcaagagagt gaaactctgt ctctaaaatg
 taaaacaaaa taaaGTTAAt tttttttttt ttattcttga gacagagttt cactcttgtt
 acccaggctg gagtgcaatg gcgtgatctc ggcttactgc aacctccgcc tcccgggttc
 aagcaattct cctgcctcag cttcccaagc agctaggatt acaagcatgt gccaccacgc
 ctggctaatt ttgtattttt agtagagatg gggtttctcc atgtttgtca ggctgctctt
 gaactcccga cctcaggtga tccgcccgtc tcggcctccc aaagtgctgg gattacaggt
 gtgagccacc acacccggcc AGGTTAAAAT ATTAACCTGC tcttactatg tt
 R
 cctaggctgc agactagctc ccatgctcaa gggatcctac cgctgcctca gcctcctcgg
 tagccgggac tacTGTTGGG CAGGAACTTG TTTTTTCTAA GATAAAATTT ACTGAAGTAT
 GGTCAGGGTT GACTTTACAT TTGACGAGTT ATGGTAAATG CTATGTAATC ATAAGAGTTG
 Gttttttttt tttccccaca gagtcttgct ctgtcaccca ggttgcagag cagtggagca
 atctcaactc actgcaacct ctgcctcccg ggttcaagtg attctcccgc ctcagcctcc
 tgagtagcta ggactacagg tgtgtgtcac cacgcctgtc taatttggct aatttttgta
 attttttttt tttttttttt ttgagacgga gtctcgttct gtcgcccagg cgggagtgct
 gtggcgcgat ctccgctcac tgcaagctcc gcctaacggg ttcacgccat tctcctgcct
 cagcctcccg agtagctggg actacaggcg cccgccactg cgcccggcta atttttttgt
 atttttagta gagacggggt ttcaccgtgg tctcgatctc ctgacctcgt gatccgcccg
 cctcggcctc ccaaagtgct gggattacag gcgtgagcca ccgcgcccgg cctaattttt
 gtatttttaa tagagacagc gtttcgccat gttggccagg ctggtcttga actcctggcc
 ttaggtgatc cacccgtctt ggcctcccaa gttcctggga tttaggcatg agccactgtg
 cctcgccAAG AGCCATTAAA AATATTggct gggcgtggtg gctcatgcct gtaaccccac
 actttgggag gccaaggcag gtggatcacc tgatgccaga agttcgagac cagcctggcc
 aacatgatga aaccccgtct caactaaaaa tacaaaaaaa tcagctgggc atggtggtgg
 gcgcgtgtaa tcccacctac tttgggaggc tgaggcagga gcatcacttg aacccagcag
 gtagaggttg cagtgagcgg agattgcacc attacactcc tgcctgggca acaagagcga
 aaccctgtct gaacaaaaaa aaaaaTTAtt tattttattt tattttattt tattttattt
 tatttttttt gagacggagt ctcactctat tgcccaggct ggagtgcagt gtcacgatct
 gggctcactg caacctccgc ctcttgggtt caagcggttc tcctgcctca tcctcccaag
 tagctgggat tacaggtgcc cgccactgtg cccagctaat tttcgtagtt ttagtagaga
 tggggtttta ccatcttggc caggctggtc ttgaactcct gaccttgtga tccacccact
 tcagcttccc agagtgctga gattacaggc atgagccacc gcgcccagcc AAAAAAAATT
 TTTATTTAAG ACGGAAGAAA TTTGAGATTT TTGTTTGGGT ACAGGTTGAG ttttttttgt
 ttgttttttg agatgcggtc tcactctgtt gcccaggctg gagtgcagtg gtgtgatctc
 agctcactgc aacttccgcc tcccggattc aagtgattct cctgcttcag cctcctgagt
 agctgggatt acagatgctc gccaccacac ctgactaatt ttttgtgttt ttagtagaga
 caggatttca ctatgttggc caggctggtc tcaaactcct gaccttgtga tccacccgcc
 tcagtctccc aaagtgctgg gattacaggc atgatccact gcacccagcc AGTTTttttg
 ttttgttttg ttttgtttAC GAA

  Submitted Frequency for ss12568733 back to top
There is no frequency submission for ss12568733.


  dbSNP summary of Genotypes for ss12568733 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-HCB
- EAST ASIA 		8686A=0.63953489
G=0.36046511A/G=0.53488374
A/A=0.37209302
G/G=0.09302326
Pr(chiSq=1.102,df=1)
=0.294		Genotype
Freq.
HapMap-JPT170170A=0.71176469
G=0.28823531A/A=0.54117650
A/G=0.34117648
G/G=0.11764706
Pr(chiSq=2.413,df=1)
=0.150		Genotype
Freq.
HAPMAP-CHB8080A=0.77499998
G=0.22499999A/A=0.62500000
A/G=0.30000001
G/G=0.07500000
Pr(chiSq=0.782,df=1)
=0.403		Genotype
Freq.
HAPMAP-CHD168168A=0.67261904
G=0.32738096A/A=0.45238096
A/G=0.44047618
G/G=0.10714286
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HAPMAP-GIH172172G=0.86627907
A=0.13372093G/G=0.73255813
A/G=0.26744187
Pr(chiSq=0.511,df=1)
=0.479		Genotype
Freq.
HAPMAP-MKK274274G=0.98905110
A=0.01094890G/G=0.97810221
A/G=0.02189781
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HAPMAP-TSI174174G=0.98275864
A=0.01724138G/G=0.96551722
A/G=0.03448276
Pr(chiSq=0.001,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss12568733 back to top
There is no individual genotype data for ss12568733.

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