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Submitted SNP(ss) Details: ss12568736           
Submitter
HandleSC_SNP
Submitter SNP IDchr1.NT_004668.15_8571776
RefSNP(rs#)rs8179274
Submitted Batch IDCHR20_NA11321_200306
Submitted DateJul 14, 2003
Publication Cited[1] A linkage disequilibrium map of human chromosome 20
[2] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[3] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 14 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR20_NA11321_200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:20SNP45081-290b06.p1cposition:-111quality:37

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12568736|allelePos=1570|len=2197|taxid=9606|alleles='G/A'|mol=Genomic
 GACGTGTCTC AACTGCTCAA AGCCTTGTGA CACTTCTTCA GCAACTTTTT TCATTACTAA
 TGGTAtccaa tacagaaatc atacctgtaa tttgaatgga aaatctagta tgaagaatta
 ttaactagta aatgaaaatc aactgctaag atgggtaaaa agaactttaa agaatacaag
 agaagcagcc tgtgtcccta gggctgagtg agagtgtcca aggaagaata aactaggaag
 ggatccccca aagctgagac tcagatctcc ttgcagagtt agtggctggg gcccactgga
 tggtagagaa gtcactggag caccacaGGA CAGGGCTGGT AAGCAGGAAG CTGTCCACTG
 GGGCGCCAGC AAAACCGGAC GGAGGGGTGT ATGCTGCTGG GTCTCCCATA TCCCATTGGC
 CAGGAAGTTG CCTGCTGTGC CATAGAAGTA AGAACAAAAG cactagaacc aggaagagaa
 gcttttcctt tcagcaccct ctactgacag gacccaatgt tgtgccagct ggcaatgggg
 aaatgttcag agcagctcag tccaatagaa atataatgca agccacatat gtaatttcag
 aatttctact agtcacatta aaaagctaaa aagaatctgg tgatactaat tttTAaattt
 gggtaagata taacataaaa tttaccatct tcaccatttt tcaaggtaca gttcagtagt
 tgtgcaaacc aaacttcgaa actttttcat cttgcagatc tgaaactcta cacccattaa
 acaacaactt ccctttcttc tttccctgca acaccagtta accacgattc tcattatttc
 aatgaatttt attactctgg gtatctcata taagtggaat tatgcagtat ttgttttttt
 gtaatgggct tatttcactt agcataatgt cctcaaggtt catctttgtt gtagcaggtg
 tcgaatttcc tccttttaaa ggctaatatt tcattgtatg taggtagcat attttgtgta
 tacattcata tgtcaatgga ttggctgggt tgcttttacc ttttggctat tgtgaataat
 gctgctgtga acataggtgt acaaatatct ctttaagacc ccgctttcag ttattctgga
 tatataccca gaagtagaat tgctggatca tatagtaatt ctattttcaa ttttttgaga
 aaccactatt ttccatagca aatgcatcat tttacatttc caccaacagt gtacatgggt
 tccagtttct ccacatcctt gccaacactt ggtcttttct gatttttaat agtgagcatc
 ctaatggatg taaagtggca tctccttata gttttgattt atatttccct aatgattagt
 gatgttgagc agcttttcat atgcctcctg gccatttggg tgtcttcttt gaagaaatgt
 ctactcaagt cttctgccca ttttaaaatt ggcttatttg gcttttgtgt tgttgagctg
 tacttcttat atagtctgga cattaaccct ttatcagata catgatttgg aaacattttc
 ttctgttca
 R
 tgtgatgtct ttttactctg ttgtgtcttt tgcacaggcg ttttacattt taatgcagtc
 caatgtattt atttatgttt ttgttgcctt aattttaata atatatttta tttaacccaa
 tatatttaaa atattcaata tgtcatcaac atacaattat tgatatttta tgtttttGCA
 CTAATGTACA GTTAGTACAA ACTGTACTgt catactggcc acatttcaag tgctcagtag
 ctatatatga ccagtgacta cagggttcct ctccagtatc agaaagcagg gcaaagcagg
 agagacttgg agctgagaga tgataaattg ataactggca caGGATTATA GTAATTATGT
 GGCCACATAT GGAGCATTAC ATATAATTAA AAGCCATGTT CTAAAAAGTT ACGAAAATTT
 TAGGAAAAGG CTTATGTGAA GTTCAAACAG AAACCACCTA TGTATTGaaa aagaaaggaa
 atacactgaa atcttagcaa tggttatctt tgggaattag tattgggctg ttttggtttc
 ttcttcctac atttatgtat tttcaaagtt ggtttaatga gcaCACACAG TTTATCCACA
 TAAAGTTTAT GCTCTTGTAG CACAGAG

  Submitted Frequency for ss12568736 back to top
There is no frequency submission for ss12568736.


  dbSNP summary of Genotypes for ss12568736 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120A=0.79166669
G=0.20833333A/A=0.64999998
A/G=0.28333333
G/G=0.06666667
Pr(chiSq=1.194,df=1)
=0.294
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686A=0.84883720
G=0.15116279A/A=0.74418604
A/G=0.20930232
G/G=0.04651163
Pr(chiSq=1.462,df=1)
=0.251
Genotype
Freq.
HapMap-JPT8686A=0.86046511
G=0.13953489A/A=0.74418604
A/G=0.23255815
G/G=0.02325581
Pr(chiSq=0.043,df=1)
=1.000
Genotype
Freq.
HapMap-YRI120120A=0.60000002
G=0.40000001A/G=0.53333336
A/A=0.33333334
G/G=0.13333334
Pr(chiSq=0.741,df=1)
=0.403
Genotype
Freq.

  Submitted individual genotype for ss12568736 back to top
There is no individual genotype data for ss12568736.

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