NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss12576740           
Submitter
HandleSC_JCM
Submitter SNP IDchr5.NT_006576.13_28793070
RefSNP(rs#)rs8185005
Submitted Batch IDTSC_200306_2
Submitted DateJul 16, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 16 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTSC_200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:jad08d04.g1position:222quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12576740|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 ATCaacatac cttttcagag agcagttttg taacactctt ttcgtgaaat ttgcaagtgg
 atatttggac cgttttgagg ccttcgttgg aaacgtgatt atcttcacat aaaaatcaga
 cagaagcatt ctaagaaagc tttttgtgat gtttgcattc aactcagaga gtttaacaaa
 ctatttcata gagcagtttt gaaacactct ttttatagaa tcttcaagtg gatacttgga
 ccactttgag gcctt
 Y
 gttggaaacg tgactatctt cacataagta ctagacagaa gcattctcag aaacttcttt
 ctgatgtgtt cattcaactc acaaagttgc accttccttt tgatagagcc attttgaaac
 actctttttt agaatctgca aatggatatt tggagcgctt tgaggcctat ggtagaagac
 gaaataactt catatagaaa ctagacagaa gcattctcag aaacctcttt gtgatatgtg
 cattcaactc tcaga

  Submitted Frequency for ss12576740 back to top
There is no frequency submission for ss12576740.


  dbSNP summary of Genotypes for ss12576740 back to top
No sufficient data to compute Hardy-weinberg probability for ss12576740.


  Submitted individual genotype for ss12576740 back to top
There is no individual genotype data for ss12576740.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement