NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss12576744           
Submitter
HandleSC_JCM
Submitter SNP IDchr5.NT_006576.13_28645285
RefSNP(rs#)rs8185008
Submitted Batch IDTSC_200306_2
Submitted DateJul 16, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 16 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC_200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:rs1-2a1069g04.p1cSCFposition:-78quality:25

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12576744|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 agttaaacgt tactttggat tcagcagttt ggaaatgctg ttactgtcca ttctgcaaat
 ggacatttct gaactctttg aggccaaagg cgaaaaagca aatatcccag gataaatact
 agaaggaagc tatcagagaa accacgttgt gatgtgtgca ttcatctcac agagttaaac
 tttttattca gcagattgga aatactgttt tgctagaatc tgcaaaggga tatttgggag
 tgccttgagg cctat
 R
 gtgaaaaagg aaatatcttc agataaaagc tagaaagaag ctttctgaga aactgctttg
 tgatgtgtgc attcctctca cagacttaaa aatttctttg tattcagcag tttagaaaca
 ctgtttttgt ccattcagcg aatggacatt tggcaactca ttgaaggcaa tggcgaaaaa
 gtcaatatcc cagtataaaa accagaagga agctatcaaa gaaaaagctt tgtgatgtgg
 gcatttttct cCTAG

  Submitted Frequency for ss12576744 back to top
There is no frequency submission for ss12576744.


  dbSNP summary of Genotypes for ss12576744 back to top
No sufficient data to compute Hardy-weinberg probability for ss12576744.


  Submitted individual genotype for ss12576744 back to top
There is no individual genotype data for ss12576744.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement