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Submitted SNP(ss) Details: ss12579963           
Submitter
HandleSC_SNP
Submitter SNP IDchr12.NT_029419.10_154799
RefSNP(rs#)rs8187609
Submitted Batch IDCHR20_NA10470_200306-2
Submitted DateJul 16, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 16 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR20_NA10470_200306
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:20SNP45079-763h04.q1cposition:-289quality:51sequence:20SNP45079-763h04.p1cposition:330quality:48

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12579963|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GCTttctcag taacttcttt gtgatgtgtg cattcatctc acagagttga aactttcttt
 tgactgagca gcttggaaac agtctttttc ttgtatctgc aaatggagat ttggagtgct
 ttgtggccta tagttgaaaa ggaaatatct ccacataaaa actagacaga agcattctca
 gagaattctc ttttatgatg tgctttgaac tcatggagtt gaaccttcgc tttgattgaa
 gagtttgaaa acatt
 Y
 tttttgtagt atctgcaaat gtatatttgg tgtgctttgt ggtctatggt tgaaaaggat
 atatcttcac atcaaaacta ggcagaagcc ttctgagaaa cttttttgtg atgtgtgcat
 tcatctcaca gggttgaatg tttcttttga ttgaacagtt tggaaacact attttgcaga
 atctgttagt ggatatttgg agcgctttga tgcctatcat ggaaaagaaa atgtctccac
 ataaaaacta gaaag

  Submitted Frequency for ss12579963 back to top
There is no frequency submission for ss12579963.


  dbSNP summary of Genotypes for ss12579963 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-HCB
- EAST ASIA 		8888T=0.84090906
C=0.15909091T/T=0.68181819
C/T=0.31818181
Pr(chiSq=0.461,df=1)
=0.527		Genotype
Freq.
HapMap-JPT8080T=0.86250001
C=0.13750000T/T=0.72500002
C/T=0.27500001
Pr(chiSq=0.260,df=1)
=0.655		Genotype
Freq.
HapMap-YRI120120C=0.83333331
T=0.16666667C/C=0.69999999
C/T=0.26666668
T/T=0.03333334
Pr(chiSq=0.096,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss12579963 back to top
There is no individual genotype data for ss12579963.

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