NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss12580800           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDchr5.NT_006576.13_28828318
RefSNP(rs#)rs8188013
Submitted Batch IDWI-WGS-200306-A.2
Submitted DateJul 21, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 21 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWI-WGS-200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S213P64491FH9.T0position:691quality:25

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12580800|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 Ggaatctgca agtggatatt tggacggttt tgaggtcttc attggaaatg ggaatatctt
 cacataaaaa ctagacagaa gaattctcag aaacttcttt ggatgtgtgc attcacctca
 cagctttgaa ccttcctttt gatagtgcag ttttgtaatg ctctttttgt agaatctgca
 agtggatatt tggactgatt tgtggccttc gctggaaacg ggattatatt ctcataaaaa
 atagacagaa gaatt
 M
 tcagaagctt ctttgtgatg tgtgcataca actcccagag ttgaaacatc cttttgatag
 tgcaagtttg aaacactctt tttgtagaat ctgcaagtgg atatttggag tgcattgtgg
 acttcgttgg aaacaggtat atattctcat aactagacag aagaattatc agaaacttct
 ttgtaatgtt tgcattcaac tcccagagtt gaaccttcct tttgatagag cagttttgaa
 atacactttT CGTAG

  Submitted Frequency for ss12580800 back to top
There is no frequency submission for ss12580800.


  dbSNP summary of Genotypes for ss12580800 back to top
No sufficient data to compute Hardy-weinberg probability for ss12580800.


  Submitted individual genotype for ss12580800 back to top
There is no individual genotype data for ss12580800.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement