NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss12580816           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDchr5.NT_006576.13_28427137
RefSNP(rs#)rs4437384
Submitted Batch IDWI-WGS-200306-A.2
Submitted DateJul 21, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 21 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWI-WGS-200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S213P63675FG5.T0position:550quality:49

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12580816|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 ATCTGCAACG GGATATTTGG GAGtgaaggg gtgggttggc cctccaaaca tgtggctttt
 tctcattagg tggaatgaga gacttggaaa agaaagagac acagagacaa agtataaagg
 aagaaaaagg aggcccagga gactggcatt cagcacacgg aggatcccca ctggcctctg
 agttccctta gtatttattg atcattactg tgtgtctctc taagaggagc atgtggcagg
 gtcataggat aatag
 Y
 ggagagaagg tcagcagcta aacacgtgaa taaagttctc tgcatcataa acaaggtaaa
 taattaagta ctgtgtttta gatatgtata cacataaaca tctcaatgcc ttaaagagca
 gtattgctgc ccgcatgtcc cacctccagc gctaaggtgg ttttccccta tctcagtaga
 tggaatatac aattgggttt tatccaggga tgagcaggag acagatgcct tcctcttgtc
 tcaactgcaa agagg

  Submitted Frequency for ss12580816 back to top
There is no frequency submission for ss12580816.


  dbSNP summary of Genotypes for ss12580816 back to top
No sufficient data to compute Hardy-weinberg probability for ss12580816.


  Submitted individual genotype for ss12580816 back to top
There is no individual genotype data for ss12580816.