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Submitted SNP(ss) Details: ss12580821           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDchr5.NT_006576.13_28480310
RefSNP(rs#)rs8188026
Submitted Batch IDWI-WGS-200306-A.2
Submitted DateJul 21, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 21 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWI-WGS-200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S213P64126FA1.T0position:-425quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12580821|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 AAGctttttg ggaaactgtt ttgtgatgtg ggcattcatc tcacagaaat aaacttttct
 tttgattgat cagattggaa acactttttt tgtagaatct gcgaagggaa gtttgggagc
 gcacaaggcc tatggtgaga aaggaaataa cttcagatac aaactagaaa gaatctttct
 gagaaactcc tttgtgatgt gtgcattcac ctcacagagt taaacctgtt ttccaattga
 gcagtatgga aacac
 Y
 gtttttgcag aatctgtgat aggatatttg agatcgtatt gaagcctatg gtgataaaag
 aaatatcttc agataaaaac aaaagagaaa gttttggagg aacttcttca tgatgtgtgc
 attcatctca cagagttaaa tgtttcattt gactgagcat tttggaaaca ctgtttttgc
 aaaatctgtg aagtaatatt agggagcgca aaaaacccta tggttaagga aatatcttca
 cataaaagct ggaaa

  Submitted Frequency for ss12580821 back to top
There is no frequency submission for ss12580821.


  dbSNP summary of Genotypes for ss12580821 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120C=0.58333331
T=0.41666666C/T=0.43333334
C/C=0.36666667
T/T=0.20000000
Pr(chiSq=0.707,df=1)
=0.403
Genotype
Freq.

  Submitted individual genotype for ss12580821 back to top
There is no individual genotype data for ss12580821.