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Submitted SNP(ss) Details: ss12580826           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDchr5.NT_006576.13_28545436
RefSNP(rs#)rs8188030
Submitted Batch IDWI-WGS-200306-A.2
Submitted DateJul 21, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 21 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodWI-WGS-200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S213P600548RC3.T0position:675quality:24

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12580826|allelePos=376|len=631|taxid=9606|alleles='C/T'|mol=Genomic
 ATCAACATAC TAAAATTCAA AGTGAACATA TTCCTTTGTA AGTAACCACA AATCCAGTTC
 TCCAAAAAAT TCTGAATTAA AGCTAAATAT AATCTTGCTT TTCCACCATC AGAGGTTGAC
 ATCTACACTG ATTTTACACT AACAAACTGA ATATTTCTTG GAAAACTCTC ACTTAAGAAA
 GTACTGTATT TGAAGAGATT ttttatctag tttttatctg aagatatttt ctttttcacc
 ataggtctca atgctctccc aaatatcctt tcaaagattc tacaagaaga gtgtttccaa
 actgctgaat gaaaagaaag gtttaaccct gcgagatgaa tgcacacatc agaaagcagc
 ttctcagata gcttc
 Y
 ttctagtttt tgacctgcga tatttgcttt ttccctactg gcctcaatta gctcccaaaa
 gtccattagc agaatgacaa aaacagtgtt tacaaactgc tgaatcaaaa gaaaggttta
 actctgtgag atgaatgcac acatcacaaa gcagtttctc ggaaagcttc tttctagttt
 ttatctgaaa gtgatttctt tttcaccata ggcctgaatg cactcccaaa tatcacttcg
 cagattttac aCAAA

  Submitted Frequency for ss12580826 back to top
There is no frequency submission for ss12580826.


  dbSNP summary of Genotypes for ss12580826 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-YRI120120C=0.82499999
T=0.17500000C/C=0.73333335
C/T=0.18333334
T/T=0.08333334
Pr(chiSq=7.997,df=1)
=0.005		Genotype
Freq.

  Submitted individual genotype for ss12580826 back to top
There is no individual genotype data for ss12580826.

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