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Submitted SNP(ss) Details: ss12582145           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDchr11.NT_009237.15_40126883
RefSNP(rs#)rs3902433
Submitted Batch IDWI-WGS-200306-C.2
Submitted DateJul 21, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 21 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWI-WGS-200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S213P69728FC9.T0position:-295quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12582145|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 aggcctaaaa gtgctcagaa atatcccttt gcagatacta gaagaacaga gtttccaaac
 tgctcaatga acagaaactt ttacctctgt gagatgaatg tacacattac aaagcagttt
 ctcagaaagc ttctttctag tttttatgtg aagatatttc cttttttacc accggcctca
 aagcactccc aaatatccct ttgcagattc tacaaaaata ctgttttgaa actgctcaat
 caaacgaatg gttca
 Y
 ctctgttaga tgaatgcaca catcagaggg aagtttctca gaaagcttct gtctagtttt
 taagtgaaga tatttccttt ttaaccaaag gtctcaaagt gctcacaaat atccctttgc
 agattctgga agattagagt ttccaaacag ctcaatgaca agatacgttt acctctgtgg
 gatgaatgca cacatcacaa agaagtttct cagaaagcta ctggttagtt tttatgtgaa
 gatatttcat ttttc

  Submitted Frequency for ss12582145 back to top
There is no frequency submission for ss12582145.


  dbSNP summary of Genotypes for ss12582145 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU118118C=0.63559324
T=0.36440679C/T=0.52542371
C/C=0.37288135
T/T=0.10169491
Pr(chiSq=1.064,df=1)
=0.317
Genotype
Freq.

  Submitted individual genotype for ss12582145 back to top
There is no individual genotype data for ss12582145.

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