NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss12582166           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDchr11.NT_009237.15_40262504
RefSNP(rs#)rs8189099
Submitted Batch IDWI-WGS-200306-C.2
Submitted DateJul 21, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 21 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWI-WGS-200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S213P67509RC5.T0position:606quality:36

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12582166|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 acatttggag cgctttgagg ccttcggtgg aaaaggaaat atcttcacat aaaaactaga
 cagaagcatt ctcagaaact tcttcctgat gtgtgcgtta aaatcacaga gttgaacctg
 tcttttgata gagcagtttt gaaGAACCCt ttttttttta tactttaagt tttagggtac
 atgtgcacat tgtgcaggtt agttacatat gtatacatgt gccatgctgg tgcgctgcac
 ccactaactc gtcat
 Y
 tagcattagg tgtatccccc gatgctatcc ctcccccctc cccccacgcc acaacagtcc
 ccagagtgtg atattcccct tcctgtgtcc atgtgatctc attgttcagt tcccacctat
 gagtgagaat atgtggtgtt tggttttttg ttcttgcgat agtttactga gaatgatgat
 ttccaatttc attcatgtcc ctacaaagga catgaactca tcacttttta gggctgcata
 gtattccatg gtgta

  Submitted Frequency for ss12582166 back to top
There is no frequency submission for ss12582166.


  dbSNP summary of Genotypes for ss12582166 back to top
No sufficient data to compute Hardy-weinberg probability for ss12582166.


  Submitted individual genotype for ss12582166 back to top
There is no individual genotype data for ss12582166.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement