Submitted SNP(ss) Details: ss12673803

Submitted SNP(ss) Details: ss12673803

Submitter
Handle	PERLEGEN
Submitter SNP ID	PS00841800
RefSNP(rs#)	rs6449586
Submitted Batch ID	08-03
Submitted Date	Aug 27, 2003
Publication Cited	[1] Matching Strategies for Genetic Assocation Studies in Structured Populations
First entry to dbSNP	Aug 27 2003 12:00:00:000AM

Resource Links
GenBank Accession	NC_000005.4
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	WAFER_HYB
Ascertainment Samplesize	23
Population	NCBI\|NIHPDR

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Comment
position 50605403

Fasta sequence (Legend)

 CAAATCTAAG ACAGTGTAGC GCACAAGGCA TGGGCATAAC TGTGATGTTA ATTAAAAATT
 AGTTACCATT TACTCAGTGT TGAAAATGTG TCAGGCACTT
 Y
 AGGGCATTGA CCTATTAATC CTCCCAAGta ttttcatgtc tacatttaca gtctaggaaa
 ttgaggcaag agaggctgag taacttgtgt aatgtcataT

Submitted Frequency for ss12673803

There is no frequency submission for ss12673803.

dbSNP summary of Genotypes for ss12673803

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
MX_MESTIZO	1304	1304	C=0.60659510	T=0.39340490	C/T=0.47392640 C/C=0.36963192 T/T=0.15644172	Pr(chiSq=0.032,df=1) =1.000	Genotype Freq.
MX_OTOMI	58	58	C=0.72413790	T=0.27586207	C/C=0.58620691 C/T=0.27586207 T/T=0.13793103	Pr(chiSq=2.778,df=1) =0.100	Genotype Freq.
MX_CAUCASIAN	46	46	C=0.67391306	T=0.32608697	C/C=0.47826087 C/T=0.39130434 T/T=0.13043478	Pr(chiSq=0.277,df=1) =0.655	Genotype Freq.

Submitted individual genotype for ss12673803

There is no individual genotype data for ss12673803.

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