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Submitted SNP(ss) Details: ss12673805           
Submitter
HandlePERLEGEN
Submitter SNP IDPS00103632
RefSNP(rs#)rs5748736
Submitted Batch ID08-03
Submitted DateAug 27, 2003
Publication Cited[1] Matching Strategies for Genetic Assocation Studies in Structured Populations
First entry to dbSNPAug 27 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWAFER_HYB
Ascertainment Samplesize31
PopulationNCBI|NIHPDR
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
position 15767574

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12673805|allelePos=101|len=201|taxid=9606|alleles='G/T'|mol=Genomic
 TGTTCCACTC ACGCTTCTGA GGATGGCCAT GGGGGCTGTG ACTGTGAGGA AGGAGGAAAG
 CTGTGCACTA AGGGTGGTCG TGCCTCCTGC GGACCTGAGT
 K
 ACCTCATGGA ACAGAGCCAA CGACACCACC AAGGCCACCC ACCTGCCTCT CCACTGCCAT
 GGCACAGACA CAGAAACCTT GTCACATTTG GTCAAGTGTA

  Submitted Frequency for ss12673805 back to top
There is no frequency submission for ss12673805.


  dbSNP summary of Genotypes for ss12673805 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
MX_CAUCASIAN4646T=0.65217394
G=0.34782609G/T=0.52173913
T/T=0.39130434
G/G=0.08695652
Pr(chiSq=0.517,df=1)
=0.479
Genotype
Freq.
MX_OTOMI5858T=0.60344827
G=0.39655173G/T=0.51724136
T/T=0.34482759
G/G=0.13793103
Pr(chiSq=0.189,df=1)
=0.752
Genotype
Freq.
MX_MESTIZO13021302T=0.58218127
G=0.41781875G/T=0.43932411
T/T=0.36251920
G/G=0.19815668
Pr(chiSq=6.120,df=1)
=0.020
Genotype
Freq.

  Submitted individual genotype for ss12673805 back to top
There is no individual genotype data for ss12673805.

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