Submitted SNP(ss) Details: ss12673809

Submitted SNP(ss) Details: ss12673809

Submitter
Handle	PERLEGEN
Submitter SNP ID	PS00154155
RefSNP(rs#)	rs2295706
Submitted Batch ID	08-03
Submitted Date	Aug 27, 2003
Publication Cited	[1] Matching Strategies for Genetic Assocation Studies in Structured Populations
First entry to dbSNP	Aug 27 2003 12:00:00:000AM

Resource Links
GenBank Accession	NC_000014.4
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	WAFER_HYB
Ascertainment Samplesize	28
Population	NCBI\|NIHPDR

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Comment
position 21935494

Fasta sequence (Legend)

 AAGCAGAAGA TGACCAGTCT GAGGCTTCAG GGAAGAAATC TGTGAAGGGA GTGTCTAAGA
 AATATGTTCC TCCACGCTTG GTTCCAGTAC ATTATGGTAT
 R
 AACTTTGGCT GCTGCCTCCT CAGCATGAAC TGTTTCTCTT TTCTCTGTTC TTGGATAACC
 CTGCTTATTT TCATCATGTA GATGAAACAG AAGCTGAGCG

Submitted Frequency for ss12673809

There is no frequency submission for ss12673809.

dbSNP summary of Genotypes for ss12673809

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
MX_MESTIZO	1302	1302	G=0.67511523	A=0.32488480	G/G=0.46082950 A/G=0.42857143 A/A=0.11059908	Pr(chiSq=0.345,df=1) =0.584	Genotype Freq.
MX_OTOMI	58	58	G=0.67241377	A=0.32758620	A/G=0.44827586 G/G=0.44827586 A/A=0.10344828	Pr(chiSq=0.009,df=1) =1.000	Genotype Freq.
MX_CAUCASIAN	46	46	G=0.71739131	A=0.28260869	A/G=0.47826087 G/G=0.47826087 A/A=0.04347826	Pr(chiSq=0.741,df=1) =0.403	Genotype Freq.

Submitted individual genotype for ss12673809

There is no individual genotype data for ss12673809.

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