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Submitted SNP(ss) Details: ss12673819           
Submitter
HandlePERLEGEN
Submitter SNP IDPS00266143
RefSNP(rs#)rs387816
Submitted Batch ID08-03
Submitted DateAug 27, 2003
Publication Cited[1] Matching Strategies for Genetic Assocation Studies in Structured Populations
First entry to dbSNPAug 27 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWAFER_HYB
Ascertainment Samplesize27
PopulationNCBI|NIHPDR
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
position 15865771

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12673819|allelePos=101|len=201|taxid=9606|alleles='A/C'|mol=Genomic
 ACTATTAATT CTTGCTCTGA TGAGGCAAAG ACAGAGCCCA CTAAGAGATG CAGAGTGTAG
 ACCCTGCTGA GGAATGTGGC TCGCGTGATA TGAAAGGCCA
 M
 AGCATAGAGT TTCGTGAGGA AGAAGCATAA AAACAAATCA AGGGTGGTTG AGTTGCCTAG
 AGAGGAGGAG GTAAGAATTG GAGAGGCTCC AAGGACATAA

  Submitted Frequency for ss12673819 back to top
There is no frequency submission for ss12673819.


  dbSNP summary of Genotypes for ss12673819 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
MX_MESTIZO13021302A=0.50384027
C=0.49615976A/C=0.50076807
A/A=0.25345623
C/C=0.24577573
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.
MX_OTOMI5858A=0.63793105
C=0.36206895A/C=0.58620691
A/A=0.34482759
C/C=0.06896552
Pr(chiSq=2.098,df=1)
=0.150
Genotype
Freq.
MX_CAUCASIAN4646A=0.58695650
C=0.41304347A/C=0.65217394
A/A=0.26086956
C/C=0.08695652
Pr(chiSq=2.738,df=1)
=0.100
Genotype
Freq.

  Submitted individual genotype for ss12673819 back to top
There is no individual genotype data for ss12673819.

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