Submitted SNP(ss) Details: ss12673820

Submitted SNP(ss) Details: ss12673820

Submitter
Handle	PERLEGEN
Submitter SNP ID	PS00272397
RefSNP(rs#)	rs208507
Submitted Batch ID	08-03
Submitted Date	Aug 27, 2003
Publication Cited	[1] Matching Strategies for Genetic Assocation Studies in Structured Populations
First entry to dbSNP	Aug 27 2003 12:00:00:000AM

Resource Links
GenBank Accession	NC_000006.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	WAFER_HYB
Ascertainment Samplesize	27
Population	NCBI\|NIHPDR

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Comment
position 66890421

Fasta sequence (Legend)

 TATATTTACT CCCAACAGCT TGGTATTTAT GTGCTGTGAT ATAGAAATCT CTCAACATTA
 TCTTTGTATG TATAGCCCCA GGTACTTTGC ATGTCTCACA
 R
 CATTACGAAT GGATAACTGA ATCTCCCAAC TTAAAAGCCT TTGTGGAATT CATACTCTAT
 CAGAACAAAG CATTAGTATT TGACATTTTA GACTAATGAT

Submitted Frequency for ss12673820

There is no frequency submission for ss12673820.

dbSNP summary of Genotypes for ss12673820

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
MX_MESTIZO	1306	1306	A=0.86753446	G=0.13246554	A/A=0.76263398 A/G=0.20980091 G/G=0.02756508	Pr(chiSq=4.962,df=1) =0.050	Genotype Freq.
MX_OTOMI	56	56	A=0.83928573	G=0.16071428	A/A=0.67857140 A/G=0.32142857	Pr(chiSq=0.303,df=1) =0.584	Genotype Freq.
MX_CAUCASIAN	46	46	A=0.91304350	G=0.08695652	A/A=0.82608694 A/G=0.17391305	Pr(chiSq=0.035,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss12673820

There is no individual genotype data for ss12673820.

Disclaimer Privacy statement