Submitted SNP(ss) Details: ss12673822

Submitted SNP(ss) Details: ss12673822

Submitter
Handle	PERLEGEN
Submitter SNP ID	PS00304404
RefSNP(rs#)	rs212772
Submitted Batch ID	08-03
Submitted Date	Aug 27, 2003
Publication Cited	[1] Matching Strategies for Genetic Assocation Studies in Structured Populations
First entry to dbSNP	Aug 27 2003 12:00:00:000AM

Resource Links
GenBank Accession	NC_000006.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	WAFER_HYB
Ascertainment Samplesize	21
Population	NCBI\|NIHPDR

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Comment
position 133738141

Fasta sequence (Legend)

 ATTATAATAT TAAAATTAAG AACAAATAAC AGTATAAAAA TGATCTTGAT TTACAGATTA
 TTGGCCTGAG ATAATTGCAA GTTTTGATCT AAATTGGCAC
 S
 GACAAATTTT AAAACTATAG CCATTGTTTG TGGGATACTT TTCTATGTAG CACTGTATTC
 GATAGCACTA AAGTAATGGA AGATGTCCAA ATGGGTCATT

Submitted Frequency for ss12673822

There is no frequency submission for ss12673822.

dbSNP summary of Genotypes for ss12673822

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
MX_MESTIZO	1288	1288	C=0.67934781	G=0.32065219	C/C=0.48136646 C/G=0.39596274 G/G=0.12267081	Pr(chiSq=5.349,df=1) =0.025	Genotype Freq.
MX_OTOMI	58	58	C=0.70689654	G=0.29310346	C/C=0.55172414 C/G=0.31034482 G/G=0.13793103	Pr(chiSq=1.828,df=1) =0.200	Genotype Freq.
MX_CAUCASIAN	46	46	C=0.65217394	G=0.34782609	C/G=0.60869563 C/C=0.34782609 G/G=0.04347826	Pr(chiSq=2.685,df=1) =0.150	Genotype Freq.

Submitted individual genotype for ss12673822

There is no individual genotype data for ss12673822.

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