Submitted SNP(ss) Details: ss12673826

Submitted SNP(ss) Details: ss12673826

Submitter
Handle	PERLEGEN
Submitter SNP ID	PS00389139
RefSNP(rs#)	rs6018600
Submitted Batch ID	08-03
Submitted Date	Aug 27, 2003
Publication Cited	[1] Matching Strategies for Genetic Assocation Studies in Structured Populations
First entry to dbSNP	Aug 27 2003 12:00:00:000AM

Resource Links
GenBank Accession	NC_000020.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	WAFER_HYB
Ascertainment Samplesize	25
Population	NCBI\|NIHPDR

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Comment
position 46896999

Fasta sequence (Legend)

 TTTCTCTGCA CCTCTTATGA TTTGGCAGTG TTAATTTTCT ACTTGAATAG CCATGTTTTA
 CATTTGCTAC TGAAGATACT AAATAAAATA TCTTTAAGCA
 R
 TTTAGCAAGT AGCATCTTTG AAAATTATCT CATCAGTATA TAAAAGTGAT ACATGTTTAT
 TATAAAAGTT AGAAATTACC AAGCATGAAA GAAAACAGGA

Submitted Frequency for ss12673826

There is no frequency submission for ss12673826.

dbSNP summary of Genotypes for ss12673826

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
MX_MESTIZO	1274	1274	A=0.71978021	G=0.28021979	A/A=0.53532183 A/G=0.36891681 G/G=0.09576138	Pr(chiSq=4.653,df=1) =0.050	Genotype Freq.
MX_OTOMI	58	58	A=0.82758623	G=0.17241380	A/A=0.72413790 A/G=0.20689656 G/G=0.06896552	Pr(chiSq=2.193,df=1) =0.150	Genotype Freq.
MX_CAUCASIAN	46	46	A=0.58695650	G=0.41304347	A/G=0.56521738 A/A=0.30434781 G/G=0.13043478	Pr(chiSq=0.631,df=1) =0.439	Genotype Freq.

Submitted individual genotype for ss12673826

There is no individual genotype data for ss12673826.

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