Submitted SNP(ss) Details: ss12673827

Submitted SNP(ss) Details: ss12673827

Submitter
Handle	PERLEGEN
Submitter SNP ID	PS00409392
RefSNP(rs#)	rs6136556
Submitted Batch ID	08-03
Submitted Date	Aug 27, 2003
Publication Cited	[1] Matching Strategies for Genetic Assocation Studies in Structured Populations
First entry to dbSNP	Aug 27 2003 12:00:00:000AM

Resource Links
GenBank Accession	NC_000020.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	WAFER_HYB
Ascertainment Samplesize	24
Population	NCBI\|NIHPDR

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Comment
position 18818060

Fasta sequence (Legend)

 CGTTGTCATC AGGAAATCAG TATCTCCTAC TCACAAAACT TGCAGGGCTA ATTTCTGTGG
 TAGTCTGCAC AAATTTAGCC AAGAAAATCA AATTTCCACT
 R
 TCCCGAGAAG GTTAGCTCTG TTGTTGAAAT TATTATAATC ACTTAGTTTA AGGGGTGAGT
 TTTTAAGAAC CACTTCTCCT TTACCAAGGC AGACAGAGCT

Submitted Frequency for ss12673827

There is no frequency submission for ss12673827.

dbSNP summary of Genotypes for ss12673827

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
MX_MESTIZO	1088	1088	A=0.62775737	G=0.37224266	A/G=0.48713234 A/A=0.38419119 G/G=0.12867647	Pr(chiSq=0.974,df=1) =0.343	Genotype Freq.
MX_OTOMI	52	52	A=0.59615386	G=0.40384614	A/G=0.50000000 A/A=0.34615386 G/G=0.15384616	Pr(chiSq=0.038,df=1) =1.000	Genotype Freq.
MX_CAUCASIAN	40	40		A=0.50000000	A/G=0.40000001 A/A=0.30000001 G/G=0.30000001	Pr(chiSq=0.800,df=1) =0.403	Genotype Freq.

Submitted individual genotype for ss12673827

There is no individual genotype data for ss12673827.

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