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Submitted SNP(ss) Details: ss12673830           
Submitter
HandlePERLEGEN
Submitter SNP IDPS00457439
RefSNP(rs#)rs6042018
Submitted Batch ID11-NOV-2003
Submitted DateNov 13, 2003
Publication Cited11721056
First entry to dbSNPAug 27 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWAFER_HYB
Ascertainment Samplesize20
PopulationNCBI|NIHPDR
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 8
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12673830|allelePos=101|len=201|taxid=9606|alleles='T/C'|mol=Genomic
 GGGAGATGCC TTGCTGTGTC AGTATCATCA GGGTGTGGCT GGGACTGTCT AGTACTGCAC
 AAAACATAAG GCTTGGGTGA AACTGTAGCC AAAACTCTTA
 Y
 AAATTCTATG GTGGACATTT GGTGACATTT GTCTTTTCCG GTAATAGCAC TTTGGTTTTC
 ATTTGGGGAA GCACTCCTTC TCCACTCTTG GCCATGATGT

  Submitted Frequency for ss12673830 back to top
There is no frequency submission for ss12673830.


  dbSNP summary of Genotypes for ss12673830 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
Caucasian2424T=0.62500000
C=0.37500000C/T=0.41666666
T/T=0.41666666
C/C=0.16666667
Pr(chiSq=0.148,df=1)
=0.752
Genotype
Freq.
PDpanel4646C=0.54347825
T=0.45652175C/T=0.65217394
C/C=0.21739130
T/T=0.13043478
Pr(chiSq=2.272,df=1)
=0.150
Genotype
Freq.
MX_MESTIZO13041304C=0.61963189
T=0.38036808C/T=0.47239265
C/C=0.38343558
T/T=0.14417177
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.
MX_OTOMI5858C=0.68965518
T=0.31034482C/C=0.48275861
C/T=0.41379312
T/T=0.10344828
Pr(chiSq=0.032,df=1)
=1.000
Genotype
Freq.
MX_CAUCASIAN4646C=0.56521738
T=0.43478259C/T=0.60869563
C/C=0.26086956
T/T=0.13043478
Pr(chiSq=1.308,df=1)
=0.254
Genotype
Freq.

  Submitted individual genotype for ss12673830 back to top
There is no individual genotype data for ss12673830.

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