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Submitted SNP(ss) Details: ss12673899           
Submitter
HandlePERLEGEN
Submitter SNP IDPS01141864
RefSNP(rs#)rs9332418
Submitted Batch ID11-NOV-2003
Submitted DateNov 13, 2003
Publication Cited11721056
First entry to dbSNPAug 27 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWAFER_HYB
Ascertainment Samplesize20
PopulationNCBI|NIHPDR
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 8
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12673899|allelePos=101|len=201|taxid=9606|alleles='C/T'|mol=Genomic
 TCTGCTTTTT CAGCCATAAA CCGAAACTTC TATCTGTAGG GATAACATAC AACATTTAAT
 ATCAAGAGTG TAATGATAAA ATATGACATC ATTCTTACCA
 Y
 TGGTGCTGAA AAATGTCACT GATACTAGTT TGGAACAGTT TATAAACACA AAGTATATTA
 GTATTTCTAG TTAAACAATT ATGAAAATGC TACTGATTGG

  Submitted Frequency for ss12673899 back to top
There is no frequency submission for ss12673899.


  dbSNP summary of Genotypes for ss12673899 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
Caucasian2424C=0.79166669
T=0.20833333C/C=0.58333331
C/T=0.41666666
Pr(chiSq=0.310,df=1)
=0.584
Genotype
Freq.
PDpanel4848C=0.58333331
T=0.41666666C/T=0.41666666
C/C=0.37500000
T/T=0.20833333
Pr(chiSq=0.490,df=1)
=0.527
Genotype
Freq.
MX_MESTIZO12981298C=0.76579350
T=0.23420647C/C=0.58551615
C/T=0.36055470
T/T=0.05392912
Pr(chiSq=0.017,df=1)
=1.000
Genotype
Freq.
MX_OTOMI5858C=0.79310346
T=0.20689656C/C=0.62068963
C/T=0.34482759
T/T=0.03448276
Pr(chiSq=0.075,df=1)
=1.000
Genotype
Freq.
MX_CAUCASIAN4646C=0.78260869
T=0.21739130C/C=0.56521738
C/T=0.43478259
Pr(chiSq=0.688,df=1)
=0.439
Genotype
Freq.

  Submitted individual genotype for ss12673899 back to top
There is no individual genotype data for ss12673899.

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