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Submitted SNP(ss) Details: ss12673949           
Submitter
HandlePERLEGEN
Submitter SNP IDPS01671642
RefSNP(rs#)rs9332433
Submitted Batch ID11-NOV-2003
Submitted DateNov 13, 2003
Publication Cited11721056
First entry to dbSNPAug 27 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWAFER_HYB
Ascertainment Samplesize20
PopulationNCBI|NIHPDR
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 8
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12673949|allelePos=101|len=201|taxid=9606|alleles='T/C'|mol=Genomic
 ATCATAAAAT TCTTACTTTC TTACTCTCAT ACTCCTAACA CCTAGCAACA TATACTTTAT
 ACCAACTTTG TACAAATTAA TTCATTAGGA GCTTTTCCCA
 Y
 GTATGATCTG ACACATTTCT GCCTTTAAAG AAATTACTGT TTAGTAAGAA AGATATAGAC
 TAATAACTTC AGTACAGAAT AAAAAGTGTC ATTATAGTAA

  Submitted Frequency for ss12673949 back to top
There is no frequency submission for ss12673949.


  dbSNP summary of Genotypes for ss12673949 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
Caucasian2222T=0.72727275
C=0.27272728T/T=0.54545456
C/T=0.36363637
C/C=0.09090909
Pr(chiSq=0.076,df=1)
=1.000
Genotype
Freq.
PDpanel4242T=0.61904764
C=0.38095239T/T=0.42857143
C/T=0.38095239
C/C=0.19047619
Pr(chiSq=0.777,df=1)
=0.403
Genotype
Freq.
MX_MESTIZO12941294T=0.67465222
C=0.32534775T/T=0.46058732
C/T=0.42812982
C/C=0.11128284
Pr(chiSq=0.396,df=1)
=0.584
Genotype
Freq.
MX_OTOMI5858T=0.74137932
C=0.25862068T/T=0.55172414
C/T=0.37931034
C/C=0.06896552
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.
MX_CAUCASIAN4646T=0.73913044
C=0.26086956T/T=0.56521738
C/T=0.34782609
C/C=0.08695652
Pr(chiSq=0.221,df=1)
=0.655
Genotype
Freq.

  Submitted individual genotype for ss12673949 back to top
There is no individual genotype data for ss12673949.

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