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Submitted SNP(ss) Details: ss12673996           
Submitter
HandlePERLEGEN
Submitter SNP IDPS02170515
RefSNP(rs#)rs9332445
Submitted Batch ID11-NOV-2003
Submitted DateNov 13, 2003
Publication Cited11721056
First entry to dbSNPAug 27 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWAFER_HYB
Ascertainment Samplesize20
PopulationNCBI|NIHPDR
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 8
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12673996|allelePos=101|len=201|taxid=9606|alleles='G/T'|mol=Genomic
 CTTGGTTTTA CATAATTATT ACTTTCCTAA GTAGATCATG TAAGAGTGCT CCATGTGATA
 TAAAGATATT TTTCTAGAAT ATGTTCTGAA GTCTTTTCCT
 K
 TTGAATACCA TCCAGAATTT TTAAAGCCTT GAATGTATGT TTACTTTTAC ATAACTTAAG
 TTCAATGTCA AAAAAAAAAA CAAATGGATT TTTGTTTTTC

  Submitted Frequency for ss12673996 back to top
There is no frequency submission for ss12673996.


  dbSNP summary of Genotypes for ss12673996 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
Caucasian2424G=0.62500000
T=0.37500000G/T=0.41666666
G/G=0.41666666
T/T=0.16666667
Pr(chiSq=0.148,df=1)
=0.752
Genotype
Freq.
PDpanel4848G=0.60416669
T=0.39583334G/G=0.41666666
G/T=0.37500000
T/T=0.20833333
Pr(chiSq=1.119,df=1)
=0.294
Genotype
Freq.
MX_MESTIZO13041304G=0.62193251
T=0.37806749G/T=0.49233130
G/G=0.37576687
T/T=0.13190185
Pr(chiSq=1.436,df=1)
=0.251
Genotype
Freq.
MX_OTOMI5858G=0.51724136
T=0.48275861G/T=0.55172414
G/G=0.24137931
T/T=0.20689656
Pr(chiSq=0.318,df=1)
=0.584
Genotype
Freq.
MX_CAUCASIAN4646G=0.67391306
T=0.32608697G/G=0.52173913
G/T=0.30434781
T/T=0.17391305
Pr(chiSq=2.175,df=1)
=0.150
Genotype
Freq.

  Submitted individual genotype for ss12673996 back to top
There is no individual genotype data for ss12673996.

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