Submitted SNP(ss) Details: ss12675023

Submitted SNP(ss) Details: ss12675023

Submitter
Handle	SNP500CANCER
Submitter SNP ID	IL15-04
RefSNP(rs#)	rs9282742
Submitted Batch ID	09022003
Submitted Date	Sep 05, 2003
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2003 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	IL15-04

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	204
Population	P1

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment
Platform: Sequencing Primer F: ACTAACCTTCCTCCATACC, Temp: 50.56, GC Content:47.37, Product Size: 480 Primer R: GACAAGAAGAGCCTATCAAG, Temp: 51.74, GC Content:45

Fasta sequence (Legend)

 GGCTTTGAGT AATGAGAATT TCGGTAAGAA RAAAAATAGA TGAAAATATC CTATGGAATT
 TCCCTTAAAG GTCGTCTGAA TCTCAGAGTC TTTGYAATAA GTTACATGGT TATTCTCCAA
 AGATCTTGAG ATATCACAGA TGTCTGTTCA CATTTGGATT GTTCTTA
 Y
 TTTGAAAATA AATAGGTTTT TAAAAACTCT ATTGACCATC TTGATAGGCT CTTCTTGTCA
 TTATAAATGT GTTATTTCAC TTATCCCACT CTTTTGTGTT CTCTAAATGT CTTTGTACTC
 ACTAAATTGT GTAGTCTTAG AGGGCAGGGT GTGGGTATCA TTCATCTTTT TGAAAGGAAG
 CATGAACAAT TAGTGGTTAA GGTGGCAGTT AACACTGCTT TCTGAAACTT TAAAAGCTTC
 GACAAC

Submitted Frequency for ss12675023

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
AFR1 - MULTI-NATIONAL	48	T=1.00000000	C=0.00000000		T/T=1.00000000 C/T=0.00000000		09022003	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	T=0.93699998	C=0.06300000	0.118 +/-0.087	T/T=0.87500000 C/T=0.12500000	0.125	09022003	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	T=0.96799999	C=0.03200000	0.062 +/-0.059	T/T=0.93500000 C/T=0.06500000	0.065	09022003	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	T=0.91299999	C=0.08700000	0.159 +/-0.097	T/T=0.82599998 C/T=0.17399999	0.174	09022003	SNP500CANCER
P1 - MULTI-NATIONAL	204	T=0.95599997	C=0.04400000	0.084 +/-0.037	T/T=0.91200000 C/T=0.08800000	0.088	09022003	SNP500CANCER

dbSNP summary of Genotypes for ss12675023

No sufficient data to compute Hardy-weinberg probability for ss12675023.

Submitted individual genotype for ss12675023

There is no individual genotype data for ss12675023.

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