Submitted SNP(ss) Details: ss12675316

Submitted SNP(ss) Details: ss12675316

Submitter
Handle	SNP500CANCER
Submitter SNP ID	CASP9-28
RefSNP(rs#)	rs2020903
Submitted Batch ID	SNP500CANCER_07_03_08_A
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2003 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	CASP9-28

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	202
Population	N.D.

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GTCCTCACAG AGCCCCTTGC CCCTCCTCTG CTGTAACCCA ACATTCATGT TTCTCTCTTT
 CTCTGCCTCT TCAGGTGCTC TTGAGAGTTT GAGGGGAAAT GCAGATTTGG TGAGTCYCCA
 TGAAATTTGG GCCAGTAGCT CGGGCTCTGG GCCCTTCCCT CCCCACCCCT CAGGTCCTT
 Y
 CCTGCAGGTG TGTCAGGAGC CCAGRGAACC CAACCCTAGG CAGTGCAGTG GGGGTCTGGT
 CTCAGCCTCC CTGACTCCGG CCCAGCGCCT GCTGGGGCAG ATTGTTCATC TCTGCGCTTC
 CTCATCTGCA AAGCTGRCAG CAGAAGCAGG GCAGACCTGA TGAGGGGCAG TCATCGGGAT
 CCAGACCAAG TYGCCACTCT CTCATTCACA AGTA

Submitted Frequency for ss12675316

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submission Batch	Submitter
P1 - MULTI-NATIONAL	204				C/T=0.44117600 T/T=0.30392200 C/C=0.24509799 N/N=0.00980400	SNP500CANCER_07_03_08_A	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62				C/T=0.41935501 C/C=0.35483900 T/T=0.22580600	SNP500CANCER_07_03_08_A	SNP500CANCER
AFR1 - MULTI-NATIONAL	48				C/T=0.45833299 T/T=0.45833299 C/C=0.04166700 N/N=0.04166700	SNP500CANCER_07_03_08_A	SNP500CANCER
PAC1 - MULTI-NATIONAL	48				C/T=0.50000000 C/C=0.25000000 T/T=0.25000000	SNP500CANCER_07_03_08_A	SNP500CANCER
HISP1 - MULTI-NATIONAL	46				C/T=0.39130399 C/C=0.30434799 T/T=0.30434799	SNP500CANCER_07_03_08_A	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	C=0.79200000	T=0.20800000	0.329 +/-0.097		08272003	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	C=0.77399999	T=0.22600000	0.350 +/-0.082		08272003	SNP500CANCER
AFR1 - MULTI-NATIONAL	48		C=0.50000000 T=0.50000000	0.500 +/-0		08272003	SNP500CANCER
P1 - MULTI-NATIONAL	204	C=0.69599998	T=0.30399999	0.423 +/-0.036		08272003	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	C=0.69599998	T=0.30399999	0.423 +/-0.075		08272003	SNP500CANCER

dbSNP summary of Genotypes for ss12675316

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	202	202	T=0.52970296	C=0.47029704	C/T=0.44554454 T/T=0.30693069 C/C=0.24752475	Pr(chiSq=1.130,df=1) =0.294	Genotype Freq.
CAUC1 - MULTI-NATIONAL	62	62	C=0.56451613	T=0.43548387	C/T=0.41935483 C/C=0.35483870 T/T=0.22580644	Pr(chiSq=0.671,df=1) =0.439	Genotype Freq.
AFR1 - MULTI-NATIONAL	46	46	T=0.71739131	C=0.28260869	C/T=0.47826087 T/T=0.47826087 C/C=0.04347826	Pr(chiSq=0.741,df=1) =0.403	Genotype Freq.
HISP1 - MULTI-NATIONAL	46	46		C=0.50000000	C/T=0.39130434 T/T=0.30434781 C/C=0.30434781	Pr(chiSq=1.087,df=1) =0.317	Genotype Freq.

Submitted individual genotype for ss12675316

There is no individual genotype data for ss12675316.

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