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Submitted SNP(ss) Details: ss12675403           
Submitter
HandleSNP500CANCER
Submitter SNP IDFANCA-16
RefSNP(rs#)rs2016571
Submitted Batch IDSNP500CANCER_07_03_08_A
Submitted DateSep 05, 2008
Publication CitedN.D.
First entry to dbSNPSep 5 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSEQUENCING
Ascertainment Samplesize204
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 10
Genotype Summarypopulation count: 10
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12675403|allelePos=301|len=602|taxid=9606|alleles='C/G'|mol=Genomic
 TTTTTTTGAG ATGAAGTCTC ACTCTGTTGC CCAGGCTGGA GTGCAGTGGT GCGATCTTGG
 CTCACTGCAC CCTCCACCTC CTGGGTTCAA GGAATTCTCC TGCCTCAGCC TCCTGAGTAG
 CTGGGATTAC AGGCGCGCAC CACCACGCCC GGCTWATTTT TGTATTTTTA GTAGAGACRG
 GGTTTCACCA TGTTAGTCAG GCTGGTCTTG AACTCCTGGG CTCAAGCGAT CTGCCCACCT
 CGGCCTCCCA AAGTGCTGGG ATTATAGGCG TGAGCTACCG CACCCGGCTG CATCATTCTT
 S
 AGTGAAAGAA AATGTTTCAG TACAYAATGA TTGTGCAGAG AGGAGARCTG AAGGAAAATG
 AAAGAGCTCT GGGAAAGCCT CATGCTGCAG AACTTGANGA GTAGACCTGG AAGTTATTGT
 TTAGAATAAT AAGGTATCCT YGGATCACTT ACATTGMAGG TTTCTAGTAA GAAAGKTGGT
 TKGTATCAAC CAACTTTGGA AGAAATAGGA AAGTRTAAGT CCTATATTCC AGCRAAATTT
 ATAAAGTTCT GGGACCTGTA AGAAGATAAA CACAAAGAGC CTTTTTTTTT TCTTTTTTTG
 T

  Submitted Frequency for ss12675403 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CAUC1
MULTI-NATIONAL
62C/G=0.51612902
C/C=0.45161301
G/G=0.03225800
SNP500CANCER_07_03_08_ASNP500CANCER
AFR1
MULTI-NATIONAL
48C/G=0.58333302
G/G=0.29166701
C/C=0.12500000
SNP500CANCER_07_03_08_ASNP500CANCER
P1
MULTI-NATIONAL
204C/G=0.48039201
G/G=0.28431401
C/C=0.23529400
SNP500CANCER_07_03_08_ASNP500CANCER
PAC1
MULTI-NATIONAL
48G/G=0.58333302
C/G=0.37500000
C/C=0.04166700
SNP500CANCER_07_03_08_ASNP500CANCER
HISP1
MULTI-NATIONAL
46C/G=0.43478301
G/G=0.30434799
C/C=0.26087001
SNP500CANCER_07_03_08_ASNP500CANCER
PAC3
MULTI-NATIONAL
178C/G=0.40449399
G/G=0.35955101
C/C=0.23595500
SNP500CANCER_07_03_08_DSNP500CANCER
AFR3
MULTI-NATIONAL
152G/G=0.48684201
C/G=0.40789500
C/C=0.10526300
SNP500CANCER_07_03_08_DSNP500CANCER
CAUC3
MULTI-NATIONAL
132C/C=0.56060600
C/G=0.33333299
G/G=0.10606100
SNP500CANCER_07_03_08_DSNP500CANCER
HISP3
MULTI-NATIONAL
98G/G=0.71428603
C/G=0.26530600
C/C=0.02040800
SNP500CANCER_07_03_08_DSNP500CANCER
P3
MULTI-NATIONAL
560G/G=0.39642900
C/G=0.36428601
C/C=0.23928601
SNP500CANCER_07_03_08_DSNP500CANCER
P1
MULTI-NATIONAL
200G=0.55500001
C=0.44499999
0.494 +/-0.01108272003SNP500CANCER
AFR1
MULTI-NATIONAL
46G=0.54299998
C=0.45699999
0.496 +/-0.01808272003SNP500CANCER
HISP1
MULTI-NATIONAL
46G=0.54299998
C=0.45699999
0.496 +/-0.01808272003SNP500CANCER
PAC1
MULTI-NATIONAL
46G=0.91299999
C=0.08700000
0.159 +/-0.09708272003SNP500CANCER
CAUC1
MULTI-NATIONAL
62C=0.69400001
G=0.30599999
0.425 +/-0.06408272003SNP500CANCER


  dbSNP summary of Genotypes for ss12675403 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
P1
MULTI-NATIONAL
204204G=0.52450979
C=0.47549018C/G=0.48039216
G/G=0.28431374
C/C=0.23529412
Pr(chiSq=0.139,df=1)
=0.752
Genotype
Freq.
CAUC1
MULTI-NATIONAL
6262C=0.70967740
G=0.29032257C/G=0.51612902
C/C=0.45161289
G/G=0.03225806
Pr(chiSq=1.977,df=1)
=0.200
Genotype
Freq.
AFR1
MULTI-NATIONAL
4848G=0.58333331
C=0.41666666C/G=0.58333331
G/G=0.29166666
C/C=0.12500000
Pr(chiSq=0.960,df=1)
=0.343
Genotype
Freq.
HISP1
MULTI-NATIONAL
4646G=0.52173913
C=0.47826087C/G=0.43478259
G/G=0.30434781
C/C=0.26086956
Pr(chiSq=0.381,df=1)
=0.584
Genotype
Freq.
PAC1
MULTI-NATIONAL
4848G=0.77083331
C=0.22916667G/G=0.58333331
C/G=0.37500000
C/C=0.04166667
Pr(chiSq=0.091,df=1)
=1.000
Genotype
Freq.
P3
MULTI-NATIONAL
560560G=0.57857144
C=0.42142856G/G=0.39642859
C/G=0.36428571
C/C=0.23928571
Pr(chiSq=17.920,df=1)
=0.001
Genotype
Freq.
CAUC3
MULTI-NATIONAL
132132C=0.72727275
G=0.27272728C/C=0.56060606
C/G=0.33333334
G/G=0.10606061
Pr(chiSq=1.684,df=1)
=0.200
Genotype
Freq.
AFR3
MULTI-NATIONAL
152152G=0.69078946
C=0.30921054G/G=0.48684210
C/G=0.40789473
C/C=0.10526316
Pr(chiSq=0.155,df=1)
=0.752
Genotype
Freq.
HISP3
MULTI-NATIONAL
9898G=0.84693879
C=0.15306123G/G=0.71428573
C/G=0.26530612
C/C=0.02040816
Pr(chiSq=0.027,df=1)
=1.000
Genotype
Freq.
PAC3
MULTI-NATIONAL
178178G=0.56179774
C=0.43820226C/G=0.40449437
G/G=0.35955057
C/C=0.23595506
Pr(chiSq=2.835,df=1)
=0.100
Genotype
Freq.

  Submitted individual genotype for ss12675403 back to top
There is no individual genotype data for ss12675403.

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