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Submitted SNP(ss) Details: ss12779101           
Submitter
HandleSC_SNP
Submitter SNP IDNT_007299.12_105898
RefSNP(rs#)rs6915206
Submitted Batch IDCHR6_NA11321
Submitted DateOct 21, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 21 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR6_NA11321
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S6A_2-505o11.q1kposition:589quality:56sequence:S6A_3-14f20.p1kposition:-213quality:43sequence:S6A_2-403g06.q1kposition:619quality:40

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12779101|allelePos=201|len=2201|taxid=9606|alleles='C/T'|mol=Genomic
 CCCGTGAAGA GGCGGACATA ATACAACAAG ACGAGAAGAC CATATGGAGC TTCAATTTAC
 CAATGCAAAC AACACCCAAT AAGCCCACAG GCTCTAACCT ACCAAACCTG CATTAAAAAT
 TTCGGCTGGG GCGACCTCGG AGTATAACCC AACCTCCGAG CAACATATGC TGAGACTTCA
 CCAGTCAAAA CGAGTTACCA
 Y
 GTACAATTGA TCCAATAATT TGACTAACGG AACAAGTTAC CCTAGgggcg tggtagctca
 tgcctgtaat cccagtggtt tgagaggctg aggcaggtgg atacctgaga tcaggagttt
 gggaccagcc tggccaacat ggtgggtgtt ggcccatctc tactaaaaat acaaaaatta
 gctgggtgtg gtggcggggg cccgtaatcc cagctgcttt ggaggctgag gcgagataat
 tgctggaact cagaaatgga gcttgcagtg agcagagatc atgccattgc actccagcct
 gggcaacaag ggcgaaatac catctcaaaa aaagagaaaa gaatgaaact ggatcctcat
 ctctcaccct atacaaatgt caactcaaga tggatgaaaa actttaagat ctgaaactat
 aaaaattcta aaagataaca ttggaaaaac tcctctagac attggcttat gccaagagtt
 catgaccaag aacccaaaag caaatacaac aaaaacaaaa ataaatagat ggcacctaat
 taaactaaaa agcttctgca cagagaaaga aataatcagc agagtaaaca gacagcccac
 agagtgggag aaaacatttg caaactatgc atctgataaa agactaatgt ccagactcta
 caaggaactc aaacaaatca gcaagaaaaa cacaaataat cccatcaaaa agtgggcaaa
 ggacatgaat agacaattct caaaagaaga tatacaaata gccaagaaac atatgaaaaa
 atgctaaaca tctctaatta tcagggaaat gcaaatcaat gagataccac cttactcctg
 caagaatagc cataatttaa aaatcaaaaa ctaatagatg ttggcacgta aatggtaaaa
 agcaaacact tttacactgc tggtgagaat gtacactagt acaaccacta tggaaaacag
 tatagaaatt ccttaaagaa ctaaaagtag aactaccact tcatccagaa gtctcactac
 tgggtatcta cccagaagaa aagaagtcat tatatgaaaa aggccttgca cacatgttta
 cagcagtaca attcacaatt gcaaaaatat ggaaccagcc taaatgccca gcaaccaatg
 agtggataaa taaaatgtgg tatatataca ccatagaata ctactcagat ataaaaagga
 acaaaataat ggcatctgca gcaacctgga tggagttgaa gaccattatt ctaaatgaag
 taactcaggt aaaaaagacc aaatatcata tgttctcact tataattggg agctaagcta
 tgaggacaca aaggcataag aatgatataa tgaactttgg cgaattagag ggaagggtag
 gagaggggtg agggataaaa tactacacat taggtaccgt gtacactgct caggtgatgg
 gtgcaccaaa atattggaaa ttaccactaa aggccttatc catgtaacca gaaaccactt
 gttcccccaa aacaaaacaa aacaaaaATA AATAAATAag tgacactggt attttgatag
 ggattgcatt gaatctggaa attgcctcgg gcagtatgat cattttaata atattgattc
 ttccaatcta tgagtgtgaa atgttggttc atttttttgg gttatctaaa atttatttta
 tcagtgtttt gtagtgttcc ttgtgtagat ccttcacccc cttgattaag tgtatgccta
 ggtatatata ttttttgtag ctattgtaaa tgggattgac ttcctgattt gtttctcagc
 ttgattgtta ttggtgcata gaaatgctac agattttgta tgctgaaact ttactgaatt
 cattaatcaa atctaggagc cttgtggagg agtctttagg cttttctaag tataagatca
 tatcatcagc agagaattaa cttctttttc aatttggatg ccttttattt ctttcttttg
 cctgaCGTAA TTAAAAGATG

  Submitted Frequency for ss12779101 back to top
There is no frequency submission for ss12779101.


  dbSNP summary of Genotypes for ss12779101 back to top
No sufficient data to compute Hardy-weinberg probability for ss12779101.


  Submitted individual genotype for ss12779101 back to top
There is no individual genotype data for ss12779101.

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