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Submitted SNP(ss) Details: ss12780460           
Submitter
HandleSC_SNP
Submitter SNP IDNT_007299.12_23213127
RefSNP(rs#)rs4629659
Submitted Batch IDCHR6_NA07340
Submitted DateNov 12, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 21 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR6_NA07340
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S6C_3-97c21.q1kposition:704quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12780460|allelePos=1490|len=2798|taxid=9606|alleles='C/T'|mol=Genomic
 Tgttagtagc agtgaatcgt acaggtctgc agcaacctca attctagcct cctcagaagg
 aagaactcga tggagggcgt aaggcagagg gagggactga gacaaaattt agagcaagag
 tgaaacttta ttaaaaagtt ttagagcagg aacgaaagta aagtacgctt ggaaaagggc
 caagtgggtg acctgagaga ttcaagtgtg cagtttgacg tttgacgttt gacatttgac
 ttggggtttt atacattggc atgcttccgg ggttgcattg cttctctcct aattctttcc
 ttggggtggg ctgtccgcat gcacagcggc ctgccagcac ttgggaggcg ctgcacgtgc
 agtgtgttta gtgttgactg aagttgtgcg catgctcact tgaggcgttt ttcccttacc
 agtctagcat tcctagagaa ggccagatac caattaaact ctgacatttg gcctctgaat
 gcgcatgctt gagcccactt gcccaactcc tgagatctta ttgggaagct gctgatcact
 agtttcgggt gtttctttct attgggagag actgcctttc cctgttgctg gctgcgagca
 attaatattt tagagagaca gtttaacaac agcctgacca tacctgatag tcacctgaca
 ttcctggtgg atggggggct tctcctgccc tgctcatgtc tgaagtacct actgtaacaT
 CATCAAATGA GAAAAACTAA AAACCATTAG CTCAAACTTC AACATGGAAG CCAGGAAAAG
 AGCAATAAAA TAAACCATCC CTACAAAAGC CATCCCACca aaaaaaaaaa aaaaaaaaaa
 aaaaaaaaaa aaaaaaaaaa gaaagaaaaa aaatcaagaa ggaagaacac aaaaagaaaa
 gaatagtaat taatgaaata agtaacgaca gtaaaagatt aacaaaacta aatctggttc
 ttgaatagga tatagggtaa acttcagata agactaatac ctcaaagaga aaaaaaaggc
 ataaacaaat gcataataaa atagggaagt aaactataga gattttaaaa ccataaaaga
 atgttatgaa caactgcatg gcaataaata ggaaagtcca gggaaaatat gatacatttc
 tgaaaaaaca gtaccataat tggcacaaga agaaatttca aacttgaata gaccaataat
 gtctatgaaa gttaaaataa taataataaa attttctctc tccaccacta atagaggtcc
 atttagttta aaagatgagt tctaccaaac ttttaagaaa tacaaaatcc ttattgtata
 aaaattattg taaaatgtta gggagaacaa ggaactctgc ctgatttagt tcgtgaaagt
 agtaCAAAAT TTGTTTTAAG ATGAAATTTT TATTCCAAAA CAAAATAAAA GCAAATTCAG
 AGACGAAAGT ATAGGCCAAT TTAACTTGTG AATTTAGATG TAAGAATTC
 Y
 gtgatgttta atattgtcaa cttgattgga ttaaaggaag caaagtattg ttcctgggtg
 tgtctgtgag ggtgttccca aaggagatta acatttgagt caatggactg ggagaaacag
 acccactctc aatctgtgtg ggcaccaatt aatcagctgc ctgcgtggtt agtataacag
 caagcagagg aacgtggaag gactagactg gctaagtctt ctgaactcca tctttctccc
 atgctggatg cttcctgctc tcgaacatcg gactccaagt tcttaaactt ctagactctt
 ggacctacac cagtggtttg ccaggggctc agggaccttt ggccacagac tgatggctgc
 actgccagct ttcctacttg tgaagttttg aggctaggac tagcttccct ctcagctttc
 agatggccta ttgtgggact tcaccttgtg atcatgtgag tcaacattcc ttaataaact
 cctctttata tatacatcta tccaattagc cctgtccttc tagagaaacc taatacaAAT
 TCTAAAAAAG AGTTATGTAA CTAAACCCAC CAGGATATTA GAAGGAATTC CAATAACTCA
 AAgtttaaca tgagaaaatc aatcaagata tttcgtacat tactggaaaa aaagagaaaa
 tcataaatta ttttaattta atagataaat aaaatattca ataaggttca ccacatattt
 atagtttaaa aaaacttata aaaataggaa taaacgggct gggcgcagtg gctcacgcct
 gtaatcccag cactttggga ttctgagagg ggcggatcac gagggcagga gatccagacc
 atcctggcta acatggtgaa accctgtccc tactaaaaat acaaaaatat tagccaggcc
 tggtggtggg cgcctgtagt cccagctact cgggaggctg aagcaggaga atggcgtgaa
 cccaaaaggc ggagcttgca gtgagccgag attgcaccac ggcactccag cctgggcgac
 agagcgagac tccgtcttaa aaaaaaaaaa aaagaaaaga aaagaaaagg aatagatggg
 aatgtcctta acatgacaaa ggcaatctat ccaaagcagt gtatcaaaca acatgagtaa
 taggagtatt ttagaaatat tgtcattaaa gtcaagaaca atataaggat atctgttatt
 tactgtaaaa cacagaaaca aaagaagtcc tagtaaatac aataagaaaa gaaaaaaata
 TTACTTGTTT TGTACCCCCC CTCCAAAATC ACCTAACCCA GAGTTTTG

  Submitted Frequency for ss12780460 back to top
There is no frequency submission for ss12780460.


  dbSNP summary of Genotypes for ss12780460 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120C=0.50833333
T=0.49166667C/T=0.55000001
C/C=0.23333333
T/T=0.21666667
Pr(chiSq=0.604,df=1)
=0.439		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090C=0.72222221
T=0.27777779C/C=0.48888889
C/T=0.46666667
T/T=0.04444445
Pr(chiSq=1.197,df=1)
=0.294		Genotype
Freq.
HapMap-JPT8888C=0.67045456
T=0.32954547C/T=0.52272725
C/C=0.40909091
T/T=0.06818182
Pr(chiSq=1.472,df=1)
=0.251		Genotype
Freq.
HapMap-YRI120120C=0.85833335
T=0.14166667C/C=0.76666665
C/T=0.18333334
T/T=0.05000000
Pr(chiSq=3.635,df=1)
=0.100		Genotype
Freq.

  Submitted individual genotype for ss12780460 back to top
There is no individual genotype data for ss12780460.

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