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Submitted SNP(ss) Details: ss12798576           
Submitter
HandleSC_SNP
Submitter SNP IDNT_007592.13_11537561
RefSNP(rs#)rs1569699
Submitted Batch IDCHR20_NA10470
Submitted DateNov 17, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 21 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR20_NA10470
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:20SNP45079-942e12.p1cposition:326quality:46

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12798576|allelePos=980|len=2396|taxid=9606|alleles='T/G'|mol=Genomic
 TTTTGACTCT ATTTAAGTCT TTGTACTATC ATTGCTTGAG TCTTGTATGG AGAATGTATA
 GGTCTGTTAT TGTGAATGCA TTTCTTCTTG CAGCCTCAGG Ttggttttat gttatttggt
 gcataggtat ctatagatgt tctaatttta ttgtcagttg tgtctctaaa gtgttcttct
 tgggctgggc atggaaaaaa caaaagtgct tttcttttca tatttattca attttggctt
 ggattattct ttgtatgtta ctcctttgtc tctttttaat tttagtcatt ctgaattatt
 tagctttagg catgtttctg gtatgtggaa tagaattggg tgttgctttg tgaaccacat
 ttaaaatctt tttcttttaa taggtgagtt aagcttcttt acagtcagta aggcttcact
 taatgtcctg gatagattct tggaaacaca gttttaagtg aaatgaatta ctatatgttg
 taggaactta actcttgctc atatcaatta acctatggta aattgtttct ttatactaca
 gttgtttcgc ttaaacttgt ggtttccaag aacctattga tggcattaag tgaggactta
 ctgtttgatg tgactacatt gtttggtctc tgctctgttg tgatgtttta aaattatata
 tattattttt tatttactat gtttctttgt gacatgtgtt tttttcttta aataaataaa
 gtgttattta ggaagttgca tattttgagt ggttaacttt tcatttataa cttctaaatg
 cctgtagttt cattgcctat gtttttgttt ttgtttttga gacagggtct tcctcatacc
 cagtctggag tgcagtgtca tgaggcatgg ttgtagttca ttgtaacctg aaactcctgg
 gctcaaggga tcttcccact tcagcctccc tagtatctat gactacggga gtgtgtcacc
 acacatggct agatttatt
 K
 attgattgat tgattgtaaa gactgggtct cactatgttg ccaaggctgg cctcaaactc
 ctggcctcaa gcaaccctcc tcctgccctg gcctcccaaa gtgttgggat tataggcatg
 agccactgta tccggtttcc attgcctgtt taaacattta ccatctactt tgtcagtgtt
 caatagtatc cttttattcc tgacttttgc caaccaaaga atgtgtttta ctttctgatt
 ttctcaccct acacattttt ctgcattatt tctatttatt ataacatttg tacattgacc
 tacttttttc ctacttttgt gcattgctac aatgcatagc atttgtacat tcatctttgg
 cttttgacaa ttaatattcc cccctgtatt ttagttttag atctacagtt atgtagcaat
 gagctcatta tcagtccttt tgctgaaatt tccccagacc tctcttggtt gcatgaagct
 catcctgttt tatttagatt cttcaagagg ggattatgga ttcttgtgtg ttaaaaactt
 tttatatagc cttgaaactt gaaggatacc ttggttgttt ttaaaattca ttattcatac
 ttttattgaa tttctaaaaa atgcttttcc attgttgcat tatattttgt tttagacaac
 tctgatgcca gttgaattta tttgccttcg ttcattattt tatcttttat gcctagtagc
 cttggacact ttttctttgt ttttgaagcc taagggttta ttaggatgtg tcttggagtt
 gactgttcca agtaaattct cccaggtact ggttgaccct tttaatatgc agattcaagt
 tttcttgaat tacaatctta aatattgttt ctatttattt ttatttcttt tttaaaattt
 ttttgctggg actctagttt tatcaacgtt atttttttct tttttgcttt ctgattccat
 cactttctct ttgacttttA Atttttttta atttttattt ttttctgaga caagctcttg
 ctctgttgcc caggttgaag tgtagtggcg taatcttggt ttactacagc ctccacctcc
 caggtcaagt gtttcttgtg cctcagcctc ctgaatagct aggattacag gtgcccacca
 ccatgcctgg ctaatttttg tgtttttagt agagacgggg ttttgccatg ttggccaggc
 tggtctcgaa ctcctggcct caagtgatct gcatgcttca gcctcccaaa gtcctgggat
 tccaggcgtg agccaccaca cccggtcTAA TTTTGTTGAG ttttaaaata atttttattt
 agaattttat GTAGGTGTTT TTAAACATAT GACATTATAT TTGAAATTTC TTACAAATAT
 TTAGTAAAGG AAGGAAAACT AAAGAAGAAT TTCCTG

  Submitted Frequency for ss12798576 back to top
There is no frequency submission for ss12798576.


  dbSNP summary of Genotypes for ss12798576 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU226226T=0.67699116
G=0.32300884T/T=0.46017700
G/T=0.43362832
G/G=0.10619469
Pr(chiSq=0.008,df=1)
=1.000		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		8686T=0.53488374
G=0.46511629G/T=0.46511629
T/T=0.30232558
G/G=0.23255815
Pr(chiSq=0.183,df=1)
=0.752		Genotype
Freq.
HapMap-JPT172172T=0.53488374
G=0.46511629G/T=0.46511629
T/T=0.30232558
G/G=0.23255815
Pr(chiSq=0.366,df=1)
=0.584		Genotype
Freq.
HapMap-YRI226226G=0.61504424
T=0.38495576G/T=0.45132744
G/G=0.38938054
T/T=0.15929204
Pr(chiSq=0.248,df=1)
=0.655		Genotype
Freq.
HAPMAP-ASW9898G=0.54081631
T=0.45918366G/T=0.59183675
G/G=0.24489796
T/T=0.16326530
Pr(chiSq=1.799,df=1)
=0.200		Genotype
Freq.
HAPMAP-CHB8282T=0.51219511
G=0.48780489G/T=0.53658539
T/T=0.24390244
G/G=0.21951219
Pr(chiSq=0.223,df=1)
=0.655		Genotype
Freq.
HAPMAP-CHD170170G=0.51176471
T=0.48823529G/T=0.45882353
G/G=0.28235295
T/T=0.25882354
Pr(chiSq=0.569,df=1)
=0.479		Genotype
Freq.
HAPMAP-GIH176176T=0.73295456
G=0.26704547T/T=0.53409094
G/T=0.39772728
G/G=0.06818182
Pr(chiSq=0.023,df=1)
=1.000		Genotype
Freq.
HAPMAP-LWK180180G=0.60555553
T=0.39444444G/T=0.45555556
G/G=0.37777779
T/T=0.16666667
Pr(chiSq=0.194,df=1)
=0.752		Genotype
Freq.
HAPMAP-MEX100100T=0.63999999
G=0.36000001G/T=0.44000000
T/T=0.41999999
G/G=0.14000000
Pr(chiSq=0.102,df=1)
=0.752		Genotype
Freq.
HAPMAP-MKK286286G=0.61888111
T=0.38111889G/T=0.46853146
G/G=0.38461539
T/T=0.14685315
Pr(chiSq=0.007,df=1)
=1.000		Genotype
Freq.
HAPMAP-TSI176176T=0.71022725
G=0.28977272T/T=0.53409094
G/T=0.35227272
G/G=0.11363637
Pr(chiSq=1.829,df=1)
=0.200		Genotype
Freq.

  Submitted individual genotype for ss12798576 back to top
There is no individual genotype data for ss12798576.

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