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Submitted SNP(ss) Details: ss12800332           
Submitter
HandleSC_SNP
Submitter SNP IDNT_007299.12_24758593
RefSNP(rs#)rs1334648
Submitted Batch IDCHR20_NA10470
Submitted DateNov 17, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 21 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR20_NA10470
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:20SNP45079-629a02.p1cposition:145quality:40

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12800332|allelePos=2000|len=4000|taxid=9606|alleles='G/A'|mol=Genomic
 Aatccactgt tagcataatt ggcttccctt tatgggtaac ccgacctttc tctctggctg
 cccttaacat tttttttcat ttcaatgttg gttaatctga cagttatgag tcttggggtt
 gctcttctcg aggagtatct ttgtgggttc tctgtatttc ctgaatttga atgttggcct
 atcttgctag actggggagt ttctcctgga taatatccca aagagtgttt tccaactcga
 ttccattttc tccctgtcac tttcaggtac accggtgaaa tgtaggtttg gtcttttcac
 ttagtccagt atttctttga ggctttgttt gttccttttc atcctttttt cgataatctt
 gtcttcatgc tttatttcat ttagttgatc ttcagtgtct gatattcttt tttccccttg
 gtcgatttgg ctatttatac ttgtgtatga ttcatgaagt tcttgtgctg tgtttttcag
 ttccatcagg tcatttacgt tcttctctaa actggttatt ctagttagca attcctctaa
 cgtgttttca aagttcttag cttccttgca ttgggttaga acatgcttat ttcacttgga
 ggagtttgtt attacccacc ttctgtagtc tacttctgtc agttcatcaa actcattctc
 tgttctgttt tgttcccttg ctggcaagga gttgtgatcc tttggaggag aagaggcatt
 ctggtttttg gaattttcag cctttttggg ctggtttttc ctttgttgtg gatttatcta
 cctttggtct tcgatgttgg tgacctttgc atggggtttc tgtgtggaca tccttttttt
 tttttttttt tttttttttt ttgatgttga tgctattcct ttctgttcat tagttttcct
 tctaacagtc aggcccctct gctgcaggtc tgctggtgtt tgctggaggt ccactccaga
 ccctgtttgt atgagtatta ccagcagagg ctgcagaaca acaaagattg ctgcctgttc
 cttcctctgg aagcttcatc tcagaggggc acccgcaaaa tgccagtcag agctcttctg
 tatgagatgt ctgttgaccc ctgctaggag ctgtctttca gtcagaaggc acaggggtca
 gggacccact tgaggaggca gtctgtccct tagcagagct cgaacactgt tctggtggat
 ctgctgttct ctttagagct ggcaggcagg aatatttaag tctgctgaag ctgggcccac
 agccaccctt tcccccaggt gttctgtccc agtgaagtgg gagttttatc tataagcccc
 tgacctgggc tgctgcctta ctttcagaga tgccctgccc agagaggagg aatctagaga
 ggcagtctag ctatggtggc tttgccaagc taaggtgagc tccgcccagt ttgaacttcc
 aggtggcttt gtttacactg tgatgggaaa actgcctacc caagcctcag taatggtgag
 cagccttctc cccaccaagc tcaagcatcc caggtcgact tcatactgct gtgctggcag
 ggagaatttc aagccagtag atcttagctt gctgggctca gtggggctgg gacctgctgt
 gcttgaccat ttgtctccct ggcttcagct ccctttccag ggatgtgagc ggttttgtct
 cgctagcatt ccagacacca ctgagatatg gaaaaaaact cctgcagcta gcttggtgtc
 tgcccaaatg gcctcccagt tttgtgcttg aaacccaggg ccctaatggc ataggcacct
 gcgggaatct cctggtctgt gggttgtgaa gactgtggga aaagtgtaga atctgggctg
 gagtgcaccg ttcctcatgg cacagtccgt catggcttcc cttggctagg ggagggaatt
 ccctgaaccc ttgcactttt tgggtgaggc catgcccacc ctgctttggc atgtgctcca
 tggactgctc cccctgtct
 R
 accagtcaca atgagatgag ccgagtatct cagttggaaa cgtagaaatc acccaccttc
 tgtgttgatc tcactgggag ctgcagactg gagctgtttc tattcagcca tcttgccTGA
 ATATTTTTTT TTTTTTAATG tatactgatt tcctttcttt ttgggtatat acccagcagt
 gggtttgctg gatcatgtgg tagctctata tttcattttt tgaggaatct acaactattc
 tctgtagtgg ttgtactaaa ctgcattccc accaacagtg taatggggat cttttttcca
 cacctcacca acatttgtta ttgcctgtct tttggatata agccatttta actgggatga
 tataaaatct cattgtagtt ttgatttgca tttctttgat gatcaatgat gttgagacat
 attcaaatac ctgtttgcca tttgtatgtc ttatttgaga aatgtgtatt caaatctttt
 gcccattttt aagtcagatt attagatttc tttcttagaa agttgtttga gctcattata
 tattctggtt attaatcctt tgtcagatgg gtggacttca aatattttct cctattctgt
 gggttgtctc ttcacttttc tgattgtatt ctttgctgtg cagaagcttt ttaatttgat
 gtgatctcat ttgttttatg cttcagttgc ctgtccttgt tgggTATTTA CTCAGTAgta
 agagatgggt tctgttttct tctgcatatg gatatgtagt tttcccagca ctgtttgttg
 aaaagactgt cttttcccca gtgtatgttc ctggcacatt aggtgaagat gagttcattg
 tagttgtgtg gatttgtttc tgggttttct attctgttcc attggtctat gtgtctgttg
 ttatgccagt accatgctgt ttttggttat tatagctctg tagtataatt cgaagtcaat
 taatgtgatt ctttcagttg tgttcttttt gcttaggata gttttggtat tctgagtatt
 tgtgctccca taggaatttt aggattgttt tctctattac tgtgaagaat atcattggta
 ttttggtagg gattgcattg aatctgtaga ttgctttgga tagtatggac attttaacaa
 tattgattct tccaatccat gaacatggaa tatctttcta ttttttggtg ttctcttaaa
 tttctttcat ctgtgtttat agttttcttt gtagagatct gtcacttatt ttgcataagt
 taattcctag gtattaattt tttttgtcaa tgggattact gttttgaatc ctttttcaga
 ttgttcactg ttggcataca gaaatgctac tgaattttgt attttgattt ttatcctaca
 actttactga atttatcagt tctaatagtt gtgtgtttaa gtctttagtt tttccaaata
 tgagattata tcatctgcaa aaaagggtaa tttgacttct tcctttccca tatggatgcc
 ctttatatct ttctcttgtc tgattgctct agctaggact tccagtatta tttaaataac
 aatggtgaag tggacatctt tgtcatgttc cagatactag aggaaaggct ttcagatttt
 tcacattcca tattacattt ggtctgtcat atatggcttt tattatgttg agggtcttcc
 tactatcccc agttctttga gggtatttat catgaagtga cgttaaattt tatcaaatgc
 tttgtcagca tcaattgaaa tgatcatatg gtttttatca ttcattctct tgatatgatg
 gatcacattg attgatttat gtatgttgaa ccatccttcc atcccagaga taaattccac
 tttgtcatga tgaatgatca ttttaatgta ttgttgaatt ctgtttgcta gtttcttgtt
 gaggatcttt gcatcagtaa tagagatatt ggcctgtaat ttcttttttt tttttaaatg
 tctttgtctg gtttgggtat

  Submitted Frequency for ss12800332 back to top
There is no frequency submission for ss12800332.


  dbSNP summary of Genotypes for ss12800332 back to top
No sufficient data to compute Hardy-weinberg probability for ss12800332.


  Submitted individual genotype for ss12800332 back to top
There is no individual genotype data for ss12800332.

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