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Submitted SNP(ss) Details: ss12801357           
Submitter
HandleSC_SNP
Submitter SNP IDNT_007299.12_4862661
RefSNP(rs#)rs1708534
Submitted Batch IDCHR20_NA10470
Submitted DateNov 17, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 21 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR20_NA10470
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:20SNP45079-421c08.p1cposition:-588quality:42

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12801357|allelePos=2000|len=2362|taxid=9606|alleles='G/T'|mol=Genomic
 TTATTTGGTT AAGTGCCTGT TTAAATCTAC CCAGCTTCAA CTGAATTTTT TGTTCttatt
 aagttttaat aattttttta ataatttttt ttaaaacatc aattttaggt tcagggatac
 aagtgcaggt ttctcacata ggtaaagtcg tgtcacaggg gtttgttgta cagattattt
 tgtcacccag gtactaagcc taatatccaa tagttgtttt ttctgatcct ctccctcctc
 ctccagtagg ccccatgtcc attttcctgt ctgtgtccat gtgttctcat catttagttc
 ccacttatag gtgagaacat gcggactttg tttttcttgt tgttgttgtt cctgcattag
 tttgctgggg ataatggcct ccagctccat tcatgttccc tcaaaggaca ttatctcatt
 tttcaaggct gcatagcatt ccatggagta tatatgccat attttcttta tccagtctgt
 cactgatggg catttagctt ggtgaaacga accagacccc aaacttgccc cattgttacc
 ctgacgcttc tgagctcccc ttcttactca ccagggggat tgctttaagc gtactcgggt
 gtcctccagc tagttttccg ctccaaccat cgctccggcg acccttcgac ctggattcga
 gcccccacaa aagggcgcca cttgccgaga ccagctcggt tggggagact ctaacccagt
 ggcgctagag gaattaaaga cacacacaca cacacacaga gaaatataga ggtgcgaagt
 gggaaatcag gtgtctcaca gccttcagag ctgagagccc ggaacagaga tttacccacg
 tatttattaa caccaagcca gtcattagca ttgtttctat agatattaaa ttaactaaaa
 gtatccctta agggaaacga agggatgggc cgaattaatt gcagcgggaa cgtggcctta
 agacacagat ctctcaggct tttgtttgtg gcttaagaat gcctttaaga ggttttccgc
 cctgggcggg ccaggtgttc cttgccctca ttcccataaa cccacaatct tccagcttgg
 gcgttatggc cattatggac atgttacatt gctgcagaga ttttatttat ggccagtttt
 ggggccagtt tatggccaga ttttgggggg cttgctccca acaCATTTAG TTTGATTCTT
 CGTATTTTAT GGATTAAAGG CTTTTAAAAG ATGCATTTAT GAAAACAAAT Tcagtgtata
 atttttctat ccaatttcat ttagatgtca tttaatgagc agaaagtttt taactctaat
 aaaaatctaa tcaatttttt agtgcttttt atgttttatc taagaaatgt ttgcctagcc
 aaaggcttca aatatattat cttgcttatt ctaaaaatat tctctagtat ttacatttag
 cagtataatc tatctcaaat tattttttgt gtatagagca ggatagagta tttactttat
 acttatttat tatgttacta gagacaggca attttttcag tactaaatgt aaaaagtact
 ttatcttcct cattaagttg acctgacatt ttagtcaaaa attagctaac tataaacctt
 cagatttatt tttggaatct attctgttca tagatctttg gtctattatt tcatgaataa
 taagtttcct tggttattat aaattatagt aaatttttaa cttaagtaag acatcttttt
 gttcctttta aggattattt gggctctttt aaatatttac atttttatat aaattttaat
 actagcatat aaatttcttc aaaagtctgc tagtattttt attgagattg cattgaaacc
 ataaatattc ctgggaagaa tggatgactt aaatttgttg aatctttcaa accaagtaca
 tcccatatac cattgtgtaa gtcagcatta tttaggtctt ctttaacttc tctaagcaat
 atgtcgtggt attaatgca
 K
 agatcttgaa cacattttat tatatttttc atagcaattt ggtatgcttt taaaattatt
 gcaaatggta tttgttttca ctttccattt tatttctaaa atatagtaat ggaaaagatt
 gtgcattccg actttgtttt ctgccaccag gcaataataa tttactaatt cgcatttgaa
 gatctgaaat aataatgtct gtacacaagc atgtcctctg taaatgaaga atcgaactcc
 ttcctttcca atcattatgc cACAGGTCTG TTCTTTCCTG GAAGAGGGAT ATTATTTCCT
 GGAATTTAGT TCATTTAGAT TTCTGTGTTT TTTTAAATGG ATTTTTTTAA CTTTGATTTT
 GT

  Submitted Frequency for ss12801357 back to top
There is no frequency submission for ss12801357.


  dbSNP summary of Genotypes for ss12801357 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-HCB
EAST ASIA
9090T=0.55555558
G=0.44444445T/T=0.37777779
G/T=0.35555556
G/G=0.26666668
Pr(chiSq=3.528,df=1)
=0.100
Genotype
Freq.
HapMap-JPT9090T=0.50000000G/T=0.42222223
G/G=0.28888890
T/T=0.28888890
Pr(chiSq=1.089,df=1)
=0.317
Genotype
Freq.

  Submitted individual genotype for ss12801357 back to top
There is no individual genotype data for ss12801357.

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