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Submitted SNP(ss) Details: ss12953967           
Submitter
HandleSC_SNP
Submitter SNP IDNT_008583.15_1000304
RefSNP(rs#)rs3011764
Submitted Batch IDCHR10_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to finished sequence
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR10_OVERLAP_SNPS
Ascertainment Samplesize13
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:10bA50E11-4c09.q1cposition:158quality:56sequence:10bA50E11-15a05.p1cposition:355quality:56sequence:10bA50E11-14b10.q1cposition:336quality:56sequence:10bA50E11-6d01.q1cposition:335quality:56sequence:10bA50E11-29c12.q1cposition:286quality:42sequence:10bA50E11-14d11.p1cposition:165quality:56sequence:10bA50E11-16c02.p1cposition:272quality:56sequence:10bA50E11-3c11.q1cposition:-348quality:35sequence:10bA50E11-22e02.p1cposition:164quality:34sequence:10bA50E11-6d06.q1cposition:266quality:56sequence:10bA50E11-24h10.p1cposition:-592quality:29sequence:10bA50E11-31e09.q1cposition:-93quality:35

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12953967|allelePos=765|len=2673|taxid=9606|alleles='G/T'|mol=Genomic
 GAACATGCTG TGCTTTCTGA CAGCTATGAG GATGGACTTA ATACAGGTGG CTGCCCTTTT
 GTAGCTCACT TTGATTCTAA CTTCAGCGTT GCATGATGCC Ctatgaatgg aatatacaat
 gtgtgtcttt cacatctgtc ttctttcact tagaataata tttccaatgt catctacatt
 tttagtatgt atcattacat caaacctttt tgttgctgaa taatattcca ttaatggata
 tactaaaatt tatccattta tcagttaaga acgtttgggt ttttttcact ttttggctat
 tgtgaataac acttctaaga acatttgtgt acaaggtttc ctggggatgt atgtttccat
 ttctcatggc tacataccta agagtgaaat tgatgggcca tatggaaact ctatgtttaa
 ccatttcaga aggtgccaga ctgtttccag tgtacacgaa ccattttata tacccactag
 ctgtgtgagg gtcccagcgt ctctccatat tctagccaac atttattatc aactctcttt
 ttgataaagt catcctagtg gttctgaagt tgcatctcat cgtagtttgc atttgtgttt
 ccctgatgtt gaacctcttt catgtaccta ttcgccactt gtatatcttc tttggagcag
 tgtgtactca acatttagta atttttaact ggtttgtgtt ttgtcattga gttataataa
 ttctttatat gttccagata aaaatgcttt acaagatata attt
 K
 cagaaatatt ctcccattct atgggttgtc ctttactttc ttgatggtac tctttgaagc
 acaaaagttt ttactttgga tgaagtccaa tttatctatt ttctcgtttg ttacttatgg
 ttttgatgtc atgtttaaga aaccattaac tagtcttagg tcatgaaatt tattcctatg
 ctttttcctt ttttaaaaac catcttaaac attttaaatt gtgcaattta gtaatgttat
 gtatattcac atcattgtga aatttagatc tttagaaatt ttttatcttt cacaactgaa
 attttgtaca cattaaatac taatttcccc cctactccca cccccggccc ttggcaatca
 ctactttatg tttctgtgat ttcgactacc ttaaatactt catatgaaga aaagtatttg
 tccttttgtg attggcttat ttcacttagc ataatgttct tgagattgat ccatgttcta
 gcatgtgaca tgatttcctt ctttccgtag gctgcttagt cttccattgt atgtatatac
 catattttat cctttcatcc accaatggat atttggattg gatctcttgg ctactgtgaa
 taatgctgta atagggattg tatggaattt gtaaattgtt ttaggtaata tggacatttt
 aacaatatta agtcttcaaa tccacatgca tggagatgtc ttttcattta tttatatact
 ctttggtttc ttgtagcatt gttgttttgt aatttttagt gtccaagttg tttgcctact
 tggttaagtt tatttctaag tattttgttc tttttcatgc tattataaat aaaattgtGG
 GTtttttgtt tttgtttgtt tgtttgttta tttgtttgtt tttgtagtag agacaggatt
 tcactatgtt ggccaggctg gtctcaaact cctggcctca agtgatccgc ctgcctcagc
 ctcccaacat gttgggatta taagtgtaag ccgccgcacc tggtctgaaa ttttcttctt
 aatttccttt ccatattggt cattgctaat gtatggaact gcaatggatt tttgtgtgtt
 aattttgcat tttgtaactt tgcggaaatc atttattagt tcttacaggt ttttggtgga
 atttttaggg ttttctacat ataaaaccat ataatctgta aatagaaata attttacttc
 ttcctttcca actggaatgc cttttatata tcttttcctt gtctaattgc tctggcccag
 tactatgttg aatagaagtg gcaagagtgg gcatccttga ctttctcctg tactttgagg
 aatagctttg tcttccacta gtaaacataa tgttagttgt gggcatttca tgtaaggcct
 ttattatgtg gtagtatttt ccttttattc ctagtttgtt gagtgttttt aatgatgaaa
 tggtgttgaa ttttgttgaa tgctttgtct gaatcatgtg gtttctgtct ttcattatat
 taatgtagtg tatgacttga ttgatttttg tatcttcact catccttgca ttccaagtat
 aaatccaact tggtcatgat gtataatctt ttttttcttt gagatagagt ctcactctgt
 cacccacgct gcagtgcagt ggtgcaatct tggctcactg caacctctgc ctcccaggtt
 caagtgattc tcctgcctca gcctcctgag taactgggat tacaggcacc tgccaccacg
 cctggctaat ttttgtattt ttagtagaga cggggtttca ccatcttggc taggctggtt
 ttgaattcct gacctcttgG CTCTGACATG GCAACTTTGC TGACCAGTAC AGGGTGTTCT
 TGTCCAGGAG TCCATGGACC CTCAGGCAAT CTAGCAAAAT TTGGAGTC

  Submitted Frequency for ss12953967 back to top
There is no frequency submission for ss12953967.


  dbSNP summary of Genotypes for ss12953967 back to top
No sufficient data to compute Hardy-weinberg probability for ss12953967.


  Submitted individual genotype for ss12953967 back to top
There is no individual genotype data for ss12953967.