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Submitted SNP(ss) Details: ss12953968           
Submitter
HandleSC_SNP
Submitter SNP IDNT_008583.15_1000410
RefSNP(rs#)rs3011765
Submitted Batch IDCHR10_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to finished sequence
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR10_OVERLAP_SNPS
Ascertainment Samplesize12
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:10bA50E11-14b10.q1cposition:230quality:38sequence:10bA50E11-17g03.q1cposition:492quality:27sequence:10bA50E11-6d12.p1cposition:547quality:27sequence:10bA50E11-3c11.q1cposition:-454quality:33sequence:10bA50E11-29c12.q1cposition:180quality:35sequence:10bA50E11-31e09.q1cposition:-199quality:38sequence:10bA50E11-16c02.p1cposition:166quality:35sequence:10bA50E11-28h07.q1cposition:93quality:34sequence:10bA50E11-15a05.p1cposition:249quality:43sequence:10bA50E11-6d01.q1cposition:229quality:43sequence:10bA50E11-6d06.q1cposition:160quality:43

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12953968|allelePos=871|len=2673|taxid=9606|alleles='G/T'|mol=Genomic
 GAACATGCTG TGCTTTCTGA CAGCTATGAG GATGGACTTA ATACAGGTGG CTGCCCTTTT
 GTAGCTCACT TTGATTCTAA CTTCAGCGTT GCATGATGCC Ctatgaatgg aatatacaat
 gtgtgtcttt cacatctgtc ttctttcact tagaataata tttccaatgt catctacatt
 tttagtatgt atcattacat caaacctttt tgttgctgaa taatattcca ttaatggata
 tactaaaatt tatccattta tcagttaaga acgtttgggt ttttttcact ttttggctat
 tgtgaataac acttctaaga acatttgtgt acaaggtttc ctggggatgt atgtttccat
 ttctcatggc tacataccta agagtgaaat tgatgggcca tatggaaact ctatgtttaa
 ccatttcaga aggtgccaga ctgtttccag tgtacacgaa ccattttata tacccactag
 ctgtgtgagg gtcccagcgt ctctccatat tctagccaac atttattatc aactctcttt
 ttgataaagt catcctagtg gttctgaagt tgcatctcat cgtagtttgc atttgtgttt
 ccctgatgtt gaacctcttt catgtaccta ttcgccactt gtatatcttc tttggagcag
 tgtgtactca acatttagta atttttaact ggtttgtgtt ttgtcattga gttataataa
 ttctttatat gttccagata aaaatgcttt acaagatata atttgcagaa atattctccc
 attctatggg ttgtccttta ctttcttgat ggtactcttt gaagcacaaa agtttttact
 ttggatgaag tccaatttat ctattttctc
 K
 tttgttactt atggttttga tgtcatgttt aagaaaccat taactagtct taggtcatga
 aatttattcc tatgcttttt ccttttttaa aaaccatctt aaacatttta aattgtgcaa
 tttagtaatg ttatgtatat tcacatcatt gtgaaattta gatctttaga aattttttat
 ctttcacaac tgaaattttg tacacattaa atactaattt cccccctact cccacccccg
 gcccttggca atcactactt tatgtttctg tgatttcgac taccttaaat acttcatatg
 aagaaaagta tttgtccttt tgtgattggc ttatttcact tagcataatg ttcttgagat
 tgatccatgt tctagcatgt gacatgattt ccttctttcc gtaggctgct tagtcttcca
 ttgtatgtat ataccatatt ttatcctttc atccaccaat ggatatttgg attggatctc
 ttggctactg tgaataatgc tgtaataggg attgtatgga atttgtaaat tgttttaggt
 aatatggaca ttttaacaat attaagtctt caaatccaca tgcatggaga tgtcttttca
 tttatttata tactctttgg tttcttgtag cattgttgtt ttgtaatttt tagtgtccaa
 gttgtttgcc tacttggtta agtttatttc taagtatttt gttctttttc atgctattat
 aaataaaatt gtGGGTtttt tgtttttgtt tgtttgtttg tttatttgtt tgtttttgta
 gtagagacag gatttcacta tgttggccag gctggtctca aactcctggc ctcaagtgat
 ccgcctgcct cagcctccca acatgttggg attataagtg taagccgccg cacctggtct
 gaaattttct tcttaatttc ctttccatat tggtcattgc taatgtatgg aactgcaatg
 gatttttgtg tgttaatttt gcattttgta actttgcgga aatcatttat tagttcttac
 aggtttttgg tggaattttt agggttttct acatataaaa ccatataatc tgtaaataga
 aataatttta cttcttcctt tccaactgga atgcctttta tatatctttt ccttgtctaa
 ttgctctggc ccagtactat gttgaataga agtggcaaga gtgggcatcc ttgactttct
 cctgtacttt gaggaatagc tttgtcttcc actagtaaac ataatgttag ttgtgggcat
 ttcatgtaag gcctttatta tgtggtagta ttttcctttt attcctagtt tgttgagtgt
 ttttaatgat gaaatggtgt tgaattttgt tgaatgcttt gtctgaatca tgtggtttct
 gtctttcatt atattaatgt agtgtatgac ttgattgatt tttgtatctt cactcatcct
 tgcattccaa gtataaatcc aacttggtca tgatgtataa tctttttttt ctttgagata
 gagtctcact ctgtcaccca cgctgcagtg cagtggtgca atcttggctc actgcaacct
 ctgcctccca ggttcaagtg attctcctgc ctcagcctcc tgagtaactg ggattacagg
 cacctgccac cacgcctggc taatttttgt atttttagta gagacggggt ttcaccatct
 tggctaggct ggttttgaat tcctgacctc ttgGCTCTGA CATGGCAACT TTGCTGACCA
 GTACAGGGTG TTCTTGTCCA GGAGTCCATG GACCCTCAGG CAATCTAGCA AAATTTGGAG
 TC

  Submitted Frequency for ss12953968 back to top
There is no frequency submission for ss12953968.


  dbSNP summary of Genotypes for ss12953968 back to top
No sufficient data to compute Hardy-weinberg probability for ss12953968.


  Submitted individual genotype for ss12953968 back to top
There is no individual genotype data for ss12953968.