NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss12953969           
Submitter
HandleSC_SNP
Submitter SNP IDNT_008583.15_1014107
RefSNP(rs#)rs7393340
Submitted Batch IDCHR10_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to finished sequence
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR10_OVERLAP_SNPS
Ascertainment Samplesize6
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:10bA399L7-62b04.p1cposition:191quality:35sequence:bA157H10-14c04.p1cposition:-286quality:43sequence:10bA399L7-36a09.p1cposition:218quality:43sequence:bA157H10-20a05.p1cposition:-65quality:35sequence:bA157H10-17d12.q1cposition:-369quality:45

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12953969|allelePos=287|len=437|taxid=9606|alleles='G/A'|mol=Genomic
 GAAAGAGACC AAATCTCCTC ATAATACttt ttttgttaat ttatttaata ataaaGATGA
 ACATAAACAC CTGTGCAATT CAGTGTTTAA AGTTTGCCAA GGTATATGTA TATATTTTTC
 CCAACGTTGa tgctgtgaga agcccaagcc atggagaggc cccaggcagg tgctctggtc
 aacagcccaa gctaaatgcc cagccaacac cagcatctgc aaccagccct gtgcgtgagg
 ctttgcagat gtctagtctc gtcaagccct gcagatgtct agtccc
 R
 tcaagcccta cagatgtctc cagcACAGAT AGAGCCTACA GATGTCTCCC CGCGAAACCA
 CACAGCCAAG TCCAGGCGGA AAATGTGAAA GATGTTTCTA CCAAGCCACT GAGTTTCTGG
 GTGGTTTGTT TTACAGTAAT AGAGGAGAAC

  Submitted Frequency for ss12953969 back to top
There is no frequency submission for ss12953969.


  dbSNP summary of Genotypes for ss12953969 back to top
No sufficient data to compute Hardy-weinberg probability for ss12953969.


  Submitted individual genotype for ss12953969 back to top
There is no individual genotype data for ss12953969.