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Submitted SNP(ss) Details: ss12953970           
Submitter
HandleSC_SNP
Submitter SNP IDNT_008583.15_11032072
RefSNP(rs#)rs9414740
Submitted Batch IDCHR10_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to finished sequence
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR10_OVERLAP_SNPS
Ascertainment Samplesize11
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:10bA338F14-27g01.p1cposition:471quality:56sequence:10bA338F14-18a05.q1cposition:388quality:46sequence:10bA338F14-29h03.q1cposition:270quality:44sequence:10bA338F14-8e01.q1cposition:349quality:42sequence:10bA338F14-4d12.q1cposition:-560quality:37sequence:10bA338F14-4d12.p1cposition:513quality:40sequence:10bA338F14-12b09.p1cposition:300quality:56sequence:10bA338F14-20c11.p1cposition:433quality:33sequence:10bA338F14-8h08.q1cposition:251quality:43sequence:10bA338F14-3b11.q1cposition:-211quality:45

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12953970|allelePos=151|len=301|taxid=9606|alleles='T/C'|mol=Genomic
 CAGATGTGCT AGATCCTAGA TGTGAGTAAG CAGATATAAA AATATCCAAT TAGTAAAAAT
 ACCCTCTAGA AGTCCATTGT CCAGTTAGTT AGGGAAGAAA CAGTAATTAA ATAGTTCCAA
 TAAGCTGTGT GAAATGCCAT GACTGCAAAA
 Y
 ATACATGAAG TACTATAACA CTATAGAAGA CAGACTGACT GTCACCATCT GCAGAAGACC
 ATGAAAGTTG CCCAGAAGAG GAGTACTTGA GCTTGTCTTG AAGGAAGATT TTCCAGGAAG
 AGAAAAATGA GAATGGCACA AATTAGCAGA

  Submitted Frequency for ss12953970 back to top
There is no frequency submission for ss12953970.


  dbSNP summary of Genotypes for ss12953970 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU116116T=0.99137932
C=0.00862069T/T=0.98275864
C/T=0.01724138
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss12953970 back to top
There is no individual genotype data for ss12953970.