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Submitted SNP(ss) Details: ss12953972           
Submitter
HandleSC_SNP
Submitter SNP IDNT_008583.15_11050675
RefSNP(rs#)rs9414742
Submitted Batch IDCHR10_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to finished sequence
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR10_OVERLAP_SNPS
Ascertainment Samplesize11
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:10bA338F14-27c09.p1cposition:471quality:23sequence:10bA338F14-12g01.p1cposition:-265quality:51sequence:10bA338F14-18h04.q1cposition:-185quality:43sequence:10bA338F14-16f11.q1cposition:-264quality:43sequence:10bA338F14-16a01.p1cposition:273quality:35sequence:10bA338F14-19h07.q1cposition:197quality:51sequence:10bA338F14-9h11.p1cposition:429quality:37sequence:10bA338F14-29g11.q1cposition:254quality:51sequence:10bA338F14-8c04.q1cposition:273quality:46sequence:10bA338F14-6g01.q1cposition:-215quality:43

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12953972|allelePos=151|len=301|taxid=9606|alleles='C/T'|mol=Genomic
 ATGTAGAATA TGGTTAAGTA ACTTATTTTA GTGTCTATTT CCATTTCTTA ATCCTTTAAG
 TTTTTCTAAA ACATTTGAAA GGAAATAGAG ATTATCTGAT ATATGCTGTA AAATGACAAA
 CATTGTCTGA CTCAACATAT TTGAGATAAC
 Y
 AATTGTTGAT TTTAAAAATC CAGTCCCAAA GTAGCTTATG AAATAGGATA AGAAACTTCA
 TATTAGAGTT ACAGAAGACA AAATAATCAG TGTGATTCAT TCTACTTTAT CTCCACATTT
 TGACTGGAAC TTTTCATCAC TTCTTTTTAT

  Submitted Frequency for ss12953972 back to top
There is no frequency submission for ss12953972.


  dbSNP summary of Genotypes for ss12953972 back to top
No sufficient data to compute Hardy-weinberg probability for ss12953972.


  Submitted individual genotype for ss12953972 back to top
There is no individual genotype data for ss12953972.