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Submitted SNP(ss) Details: ss12953974           
Submitter
HandleSC_SNP
Submitter SNP IDNT_008583.15_11051390
RefSNP(rs#)rs4948264
Submitted Batch IDCHR10_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to finished sequence
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR10_OVERLAP_SNPS
Ascertainment Samplesize6
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:10bA338F14-28b10.p1cposition:417quality:31sequence:10bA338F14-22e05.p1cposition:-339quality:40sequence:10bA338F14-1f07.q1cposition:-328quality:32sequence:10bA338F14-6h08.q1cposition:303quality:51sequence:10bA338F14-28b10.q1cposition:-101quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12953974|allelePos=289|len=456|taxid=9606|alleles='C/T'|mol=Genomic
 CATCTAGGAT GCAGGGGAAG AGGAATAAAA AAAGTGACAC CTTCAGAACA GAATTTGGGG
 GAATAAAGAG GGCCAGACTT TCAATTAAAA TATTTTCATC Tggccaggtg ctctatctca
 cagctgtaat cccagcattt tgggaggctg aggcaggtgg atcatttgag cctaagagtt
 tgagaccagc ctgggcaaaa caccatctct acaaagaaaa aaaaaaaaag aattaaaaat
 tagtcgggca tgatggtgca tgcctgtggt cccagctatt tccaaggc
 Y
 gaggcaggag tatagcttga cccccggagg tggaggctgc agtgaactgt gattgtgcca
 ctgcactcct gcctgggcga cagccagacc ctgtctcaaa aaataaaaTT TCATTTTTAT
 TTCTTCCCAC ATAACTCCTG TTAGTCCTTT CTCGTTTCAC CCTTTAT

  Submitted Frequency for ss12953974 back to top
There is no frequency submission for ss12953974.


  dbSNP summary of Genotypes for ss12953974 back to top
No sufficient data to compute Hardy-weinberg probability for ss12953974.


  Submitted individual genotype for ss12953974 back to top
There is no individual genotype data for ss12953974.