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Submitted SNP(ss) Details: ss12953976           
Submitter
HandleSC_SNP
Submitter SNP IDNT_008583.15_11051502
RefSNP(rs#)rs7917700
Submitted Batch IDCHR10_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to finished sequence
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR10_OVERLAP_SNPS
Ascertainment Samplesize8
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:10bA338F14-6h08.q1cposition:191quality:43sequence:10bA338F14-28b10.p1cposition:305quality:35sequence:10bA338F14-30e08.p1cposition:478quality:32sequence:10bA338F14-28b10.q1cposition:-213quality:56sequence:10bA338F14-30d03.p1cposition:416quality:42sequence:10bA338F14-22e05.p1cposition:-451quality:44sequence:10bA338F14-1f07.q1cposition:-440quality:42

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12953976|allelePos=398|len=548|taxid=9606|alleles='C/T'|mol=Genomic
 CTAGGATGCA GGGGAAGAGG AATAAAAAAA GTGACACCTT CAGAACAGAA TTTGGGGGAA
 TAAAGAGGGC CAGACTTTCA ATTAAAATAT TTTCATCTgg ccaggtgctc tatctcacag
 ctgtaatccc agcattttgg gaggctgagg caggtggatc atttgagcct aagagtttga
 gaccagcctg ggcaaaacac catctctaca aagaaaaaaa aaaaaagaat taaaaattag
 tcgggcatga tggtgcatgc ctgtggtccc agctatttcc aaggccgagg caggagtata
 gcttgacccc cggaggtgga ggctgcagtg aactgtgatt gtgccactgc actcctgcct
 gggcgacagc cagaccctgt ctcaaaaaat aaaaTTT
 Y
 ATTTTTATTT CTTCCCACAT AACTCCTGTT AGTCCTTTCT CGTTTCACCC TTTATTCTCC
 CCCATTCTGA TTCTAAACCA GAATCAGCCT CTCTCAATTC ATACATGTTT TCATCTTATT
 TCTGAACAAA GGGAAAAAAT AATCTGGAAG

  Submitted Frequency for ss12953976 back to top
There is no frequency submission for ss12953976.


  dbSNP summary of Genotypes for ss12953976 back to top
No sufficient data to compute Hardy-weinberg probability for ss12953976.


  Submitted individual genotype for ss12953976 back to top
There is no individual genotype data for ss12953976.