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Submitted SNP(ss) Details: ss12953982           
Submitter
HandleSC_SNP
Submitter SNP IDNT_008583.15_11071392
RefSNP(rs#)rs1904410
Submitted Batch IDCHR10_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to finished sequence
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR10_OVERLAP_SNPS
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:10bA338F14-22a04.p1cposition:524quality:28sequence:10bA338F14-28e07.q1cposition:-286quality:41sequence:10bA338F14-8b09.q1cposition:-508quality:43sequence:10bA338F14-2f05.q1cposition:62quality:56sequence:10bA338F14-2a12.q1cposition:-308quality:35sequence:10bA338F14-8g06.q1cposition:-441quality:29sequence:10bA338F14-28c07.q1cposition:-286quality:40sequence:10bA338F14-25c10.q1cposition:235quality:35sequence:10bA338F14-4g04.q1cposition:-504quality:42

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12953982|allelePos=220|len=1760|taxid=9606|alleles='A/C'|mol=Genomic
 AAGGGGCTCT TTTACTTATA TTTAGACATA TATGTTAATC ATATATAACT AATGTACACA
 TAGAAAGTAA AATAGAAGCT GGGgccggat gcagtggctc acgcctgtgt agtccagcag
 tttgagaggc tgaggcagga ggattgcttg aactcaggag tttgagacca gcctgggcaa
 catagggaga ccttgtctct aTTTTATTTT TTTTTAAAA
 M
 AGAAAGTaag taaaatagaa gaaaaaaaat taattaaagt gtttctaaaa tttcatcaca
 tccactcagc tctcatgaat caccttttta tttctcatta ttattgttca tgttatcaag
 agcactggta attcagcact ttctaaaata atccataaaa taactaaaaa ccattggttc
 tgtggtctta agacaacctt gcgattatgt ggagctaatt tattttgttt attcttgctt
 tatgaatgtt gccaaacata ttggattcac acctttctcc actcctttcc cacaaaccat
 ttgaaactta ggggctaaaa gagccctcag tatgctcttc tgaaatttga ttctaagcta
 ctgacaccca ttcttcaagt tttgatATGC TTGGGCATGT ACAGGCaatg acaaccataa
 tgcttgtgca tgtacaggca atgacaacta tgtcacaaat gccacctggc tgacagagat
 tgtaacattc cattaattat aacatgcatc ttgatttcaa agttgtccca atgccagatt
 tgatatttat cttagactcc ataaaataAT GCATGTGTCT TTTACAAGGA TACAGAGCTT
 GAGAATACAG TTTCaaatac aagaaggaaa aaaaagtaac agactaacat taactaaatg
 taagttgata aagcaatgta gaactgcact gtccaataag gtaggcactg accacactcc
 aggctagtgt aaattgagat gtgctttaag tgtacaatac ataccagatt tcaaagactt
 accacaaaat atagagaata tacaacatct cattaattat tattatacta attatctgtt
 taagtgataa tgttttgaat atattgagtt aaataaaatg tatcattggc caggcacggt
 ggctcatgcc tgtaatccca gcactttggg aggccgaggt gggcagatca cctgaggtca
 gaagctcgag accagcctgg ccaaggtggt gaaaacacct ctctactaaa aatacaaaaa
 aaattagcca ggcatggtgg cacatgcctg tagtcctagc tacttaggag gctgaggcag
 gagaattgct tgaatctggg aggcacaggt tgcagtcagc caagattgtg ccattgcact
 ccagcctggg tgacagtgcg agactgtttc aaaatttttt taaaaaatgt aatattaaaa
 ttgacttaac ctgtttcttt ttacctttat agtgtggttc caagaaaatt caaaagtaca
 catatgcctc acatatttcc atcagacaat tctgatatag gttttaagaa caaaagcatt
 attaagaaaa aagatggttg ctacataatg attaaaagtt caattcacca agaagttata
 gaaatactaa atacatagca gcacaataaa atattctaaa aaatatgaag caaaatttga
 tagaactgct ggtagaaatt aataaattca actatcataa tgagagattt caacacattt
 gtcttatcta ttgatagaTG AGGCTGTCAG AAATTCAACA

  Submitted Frequency for ss12953982 back to top
There is no frequency submission for ss12953982.


  dbSNP summary of Genotypes for ss12953982 back to top
No sufficient data to compute Hardy-weinberg probability for ss12953982.


  Submitted individual genotype for ss12953982 back to top
There is no individual genotype data for ss12953982.