NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss12953985           
Submitter
HandleSC_SNP
Submitter SNP IDNT_008583.15_11074924
RefSNP(rs#)rs2448334
Submitted Batch IDCHR10_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to finished sequence
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR10_OVERLAP_SNPS
Ascertainment Samplesize12
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:10bA338F14-25e04.p1cposition:602quality:29sequence:10bA338F14-27a08.q1cposition:97quality:40sequence:10bA338F14-7f09.q1cposition:198quality:51sequence:10bA338F14-7f04.q1cposition:163quality:40sequence:10bA338F14-12g02.q1cposition:-349quality:37sequence:10bA338F14-7b02.q1cposition:334quality:46sequence:10bA338F14-30b05.q1cposition:342quality:45sequence:10bA338F14-30e09.q1cposition:66quality:33sequence:10bA338F14-12a09.q1cposition:-247quality:35sequence:10bA338F14-20a02.p1cposition:-209quality:36sequence:10bA338F14-3h03.q1cposition:485quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12953985|allelePos=201|len=351|taxid=9606|alleles='C/G'|mol=Genomic
 AGATAATACA AATAGAAGCA GAAATTAATG AAATATAAAA TTATAGATAC AACGGAGAAC
 GTTAACAAAG GCAAACATGG GTTCTTCCAA AACAAACAGG Gcaggcgtgg tggcatgtgt
 ctgtaatccc agctactcaa gaggctgaga catgagaatc gcttgaacct gggaggcaga
 ggttgcagtg aaccaagata
 S
 tccagaaaaa ggagaaaagt cacaaataaa tagtatcatg gccactgcac tccagtctgg
 gcaacagagc tagactctgt ctcaaaaaaC ACCAAAACAG AAACAACAGT AAGAAAAAAC
 AAACAAAGAT AACCTTCTGG CAAGATTGTA

  Submitted Frequency for ss12953985 back to top
There is no frequency submission for ss12953985.


  dbSNP summary of Genotypes for ss12953985 back to top
No sufficient data to compute Hardy-weinberg probability for ss12953985.


  Submitted individual genotype for ss12953985 back to top
There is no individual genotype data for ss12953985.