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Submitted SNP(ss) Details: ss12953987           
Submitter
HandleSC_SNP
Submitter SNP IDNT_008583.15_11076430
RefSNP(rs#)rs2448338
Submitted Batch IDCHR10_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to finished sequence
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR10_OVERLAP_SNPS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:10bA338F14-15h09.q1cposition:342quality:35sequence:10bA338F14-24a04.p1cposition:-382quality:51sequence:10bA338F14-4a05.p1cposition:-147quality:40

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12953987|allelePos=431|len=581|taxid=9606|alleles='C/T'|mol=Genomic
 GCTTAAATAT ATTCTCACAA AACACAAACA AAACAGAAGA TGGAAGACTA TTAAAATAGA
 GATATAATAA ACAGATTCta aaagacattt ttttggaaaa gtatggatat ttgaatgtgg
 ataatatatt agagtattat ggaattagtg ttactttcct aggttttgat agtggtgttt
 ggttatatag gaaaacatca ttctcaagaa atgcaagtga ggcatttgag gaagccatga
 tgtctgtaat ttacttcaaa atggttcagg aaGTGGgaag agagaaaaga agaagaagaa
 gaagagagca aagaaagaga aggtgaagaa ggaggagaag gaagaggaag gaagaagaat
 gacagaagag aagaaggaag agagaagaga ggaggagagg agaagagaag aGAAATCAAA
 TTTGGTCAAA
 Y
 GAAGGGTATA AGAGTTTTAT TGCTACTACT CTCAACTATT TTGAGGTTTA AAAAGTTTTA
 Acagcacttt gggaggccga gataggcgga tcatgaggtc aggagatcga gactatcctg
 gctaacacgg ATAATTGGGG AATTTAGGGT

  Submitted Frequency for ss12953987 back to top
There is no frequency submission for ss12953987.


  dbSNP summary of Genotypes for ss12953987 back to top
No sufficient data to compute Hardy-weinberg probability for ss12953987.


  Submitted individual genotype for ss12953987 back to top
There is no individual genotype data for ss12953987.