NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss12953990           
Submitter
HandleSC_SNP
Submitter SNP IDNT_008583.15_11091601
RefSNP(rs#)rs1904415
Submitted Batch IDCHR10_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to finished sequence
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR10_OVERLAP_SNPS
Ascertainment Samplesize6
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:10bA338F14-28a11.q1cposition:115quality:40sequence:10bA338F14-27h10.p1cposition:85quality:35sequence:10bA338F14-2g01.q1cposition:599quality:25sequence:10bA338F14-3c02.q1cposition:-367quality:56sequence:10bA338F14-27h09.q1cposition:-101quality:39

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12953990|allelePos=151|len=301|taxid=9606|alleles='G/T'|mol=Genomic
 AATATATTTT TAGTTTTAGT CTCTTTCAAT TGTTTTTAGG ATGATAAATA TTTTTATCCA
 GACTTTATAG ACTGGTTACA ATAATTGACT TAATCTAATT TAAATAAAAT TTCTATTTAG
 TTACCCTAAG TATAAATGAC CTGTCATATA
 K
 ACATGTTTAA GCTATTCTAA AATTATAACT TATGTATATA ATCCTTCCCT TTCTGTGGTA
 CTTGAAGGAA TGTTTAGATC TATATATGGC ACAAATGAGG GGTATATCCC TTCGCCTGTT
 CCTCGACTCC AGCAGAACAT TCTCGATTCT

  Submitted Frequency for ss12953990 back to top
There is no frequency submission for ss12953990.


  dbSNP summary of Genotypes for ss12953990 back to top
No sufficient data to compute Hardy-weinberg probability for ss12953990.


  Submitted individual genotype for ss12953990 back to top
There is no individual genotype data for ss12953990.