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Submitted SNP(ss) Details: ss12992560           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1000684
RefSNP(rs#)rs1175546
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize5
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1dJ897I12-6a08.q1cposition:287quality:35sequence:1dJ897I12-5g09.q1nposition:177quality:42sequence:1dJ897I12-16h03.p1cposition:-133quality:35sequence:1dJ897I12-1f02.q1nposition:249quality:37

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992560|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 GTTATTGGAG GGCTGAGGCT GCGCCTGCCC CAGGCCAGGT CCCGCCGAAA GCATCAAGTC
 AGGTAAACAG GAGGGGCTGC GCCAGTCTTG GTAGGGAGGC AGACTCCACA TCATCCGCCT
 TTGGGGCGAG CAGGCTCACT TGAGATCTGC CTGGGCCAGC CGGTGGCAGG TGGAGCTGCA
 TGGCTGATTG CACACTGCCC
 Y
 AAGGCTCCTG GCTCCAAACC CAAGGAGGGA GCCCAAGGGC CTGTCCTGGG CTGCGGTCTG
 AAGCAATGAT GCTTTCCTGG GAGCCTGTTG TTGGGTGGGC TGCTGCCTGC CCCAGCCCCA
 TGACAGCCTG GATCTTCAAA AAGAGATCCC TACCTCTGAC CTGCCACTCC CAAGGAGGGA
 AAGGAGTAGC CAGCTGGTAC

  Submitted Frequency for ss12992560 back to top
There is no frequency submission for ss12992560.


  dbSNP summary of Genotypes for ss12992560 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992560.


  Submitted individual genotype for ss12992560 back to top
There is no individual genotype data for ss12992560.