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Submitted SNP(ss) Details: ss12992562           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1011795
RefSNP(rs#)rs9424282
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize13
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bB531C17-18g09.p1cposition:360quality:40sequence:1bB531C17-21g06.p1cposition:-278quality:35sequence:1bB15E13-2i23.p1kposition:-422quality:51sequence:1bB15E13-1c12.q1kposition:-159quality:51sequence:1bB15E13-1k06.p1kposition:-267quality:51sequence:1bB15E13-2n16.q1kposition:157quality:56sequence:1bB15E13-3b07.p1kposition:163quality:39sequence:1bB15E13-3h18.p1kposition:256quality:39sequence:1bB15E13-1n23.p1kposition:137quality:39sequence:1bB15E13-3b02.p1kposition:270quality:40sequence:1bB531C17-23e06.q1cposition:-317quality:37sequence:1bB15E13-1b08.q1kposition:423quality:56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992562|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 GGGGCAGGCA CTGCGAGCAA ACCCTTCTGT CCCAGCTTCC TCTAGGGCTG GAGGAAGACC
 CTGCTCAGGA TGCAAAGCCT GACCCTCGGG GATCTCTGGC AGCCTCGGTG CCGGCTCTGC
 CCCCAGAGAG GAGGCAACAG CATGTGGGCC CCCTGGAAGC CAGCACTCGC CCTTGGTCAG
 TGTGGCTGGT GAGTCCTAGT
 Y
 ACACTGGGTG TGGAGGAGAC AGGTAGGGCT GGACTTGATA GACTCTGAAC AGAGTTGGGG
 ATGGGCTGAT TACTCAGAGG ACACCTCCTG CTTCGCCTGG AATGGATGGC AGGGGTGATG
 GAATTTCTCA AGCCCCAAGT TGTGAAGGAA ATGAAAAAAG GAACCTGCTG GAATCCTCCG
 GCTCAAGCAA TCAAGCTGCT

  Submitted Frequency for ss12992562 back to top
There is no frequency submission for ss12992562.


  dbSNP summary of Genotypes for ss12992562 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992562.


  Submitted individual genotype for ss12992562 back to top
There is no individual genotype data for ss12992562.