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Submitted SNP(ss) Details: ss12992564           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1013312
RefSNP(rs#)rs9424284
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize6
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bB531C17-7f09.p1cposition:486quality:46sequence:1bB531C17-11f03.q1cposition:424quality:32sequence:1bB15E13-1b15.q1kposition:576quality:29sequence:1bB15E13-1k06.q1kposition:288quality:56sequence:1bB15E13-3i14.q1kposition:-111quality:40

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992564|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 TCCTTGTCAG AAATGCAAGG CCCTGCTGAC GAGGTCGCAC GCTGGCCCCT CAGGCCAGCA
 CTGGGCACCC AGTGGCGGCC TCAGCAGGAA ATGAAGCCAG AGATTTCACA CATGAAGGGT
 GGATGAGGGT GGCGTCAGTT TTCACTTGTG TGAGGGAGCA AGCAGGCGCG CCCGCAAGGA
 TGTGAGGTGC ACACTGGCTT
 Y
 GGGGAGGATG AGTTACACAG GGGGTGGCTA GGGGTCCTCC TGACACCTGA TGGGATGAAA
 TGCCGTCACC TGTCACCCGG AGCTGACACT CTACTGCAGG AAACACAACC CTCGCAGTGG
 CTAAGCTGAC GGCAGCAACG TGGGTCCTGA CTCTGGCCTG GCATACCGGC TGCCTTCCGG
 GCCCATGGCT TTTGCAGGGG

  Submitted Frequency for ss12992564 back to top
There is no frequency submission for ss12992564.


  dbSNP summary of Genotypes for ss12992564 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992564.


  Submitted individual genotype for ss12992564 back to top
There is no individual genotype data for ss12992564.