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Submitted SNP(ss) Details: ss12992565           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1016953
RefSNP(rs#)rs9424285
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize12
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bB15E13-3b21.q1kposition:257quality:45sequence:1bB531C17-13b04.q1cposition:-228quality:43sequence:1bB15E13-2j11.p1kposition:362quality:42sequence:1bB531C17-25d12.q1cposition:-231quality:43sequence:1bB15E13-2f09.q1kposition:-493quality:37sequence:1bB15E13-2k06.q1kposition:-458quality:51sequence:1bB531C17-16f11.p1cposition:209quality:38sequence:1bB531C17-18e12.p1cposition:-180quality:51sequence:1bB531C17-19c02.p1cposition:365quality:51sequence:1bB531C17-7b03.q1cposition:-118quality:35sequence:1bB15E13-1f19.p1kposition:-61quality:34

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992565|allelePos=695|len=1791|taxid=9606|alleles='G/A'|mol=Genomic
 CCATGCTGTA TCCAACATCA CACCTTAGTC CTAGAGGGAT GCCTACAGCC CTGAGGACCA
 AGGAAAATGC CAGTGAACTC GCCTCTTCCA GGAAATGCCA Atgaaaccac ctttgcaaaa
 actgtaacag tgagaaaatt atggtggtga aagagatctg atctaaccaa tccccatctt
 tggccttcca actacctttt ttttttttta aatggagttt tgctcttgtt gcccaggctg
 gagtgcaatg gtatcatctt ggctcattgc aacctccgcc tcccgggttt aagcgattct
 cctgccttgg cttcctgagt agctaggatt acaggcatgt gccaccatgc ccagctagag
 atgggtttct ccatgttggt caggctggtt tagaactccc gacctcaggt gatccgcctg
 cctcagcctc ccaaactgct gggattacag gcaggagcca ccgcgcctgg cccttcaaac
 tacctttaat tattcctggg cttgggccaa gctaactttg ggagacattt gtaatttaaa
 tgataatact ccttccgtaa aactcaactg cctttgtaaa gctaatgagg gtccacgagg
 ataggaggat ggaggaacct gaattctgct aaggggtaga cataaacaac tgccagctat
 tcttctggag gtcacaagat atgcgacttc ccca
 R
 tgactcctgc agataacagc actagcagca ctgtggaacc taagaccggc cttctgagct
 gtgtcttttc agggtttttg catgtctgat caatggctct acctgaaacc aaaaagagct
 ccccgcagcc ccagccagaa gtgactcagt aagcaggacc gtttcccaca cccctatgat
 tgcacctcaa ccaatcagca gcaagcaccc gttgcctagc caccctcccc tttccccaaa
 ctatccttga aaaaccccgc ctccaaattt ttggggaagc tgatttagta ataaaactcg
 gccgggcgcg gtggctcatg cctgtaatct cagcaccttg gaggccaaga caggcagatc
 atgaggtcag gagatcgaga ccatcctggc taacacagtg aaactccatc tctactaaaa
 atacgaaaaa ttagctgggt gttgtggcgg gcgcttgtag tcccagctac tcgggaggct
 gaggcaggag aatggcgtga acccgggagg cggagcttgc agtgagccaa ggttgcacca
 ctgcacacca gcctgggaga cagagcgaga ctccatctca aacaacaata ataataacag
 taaaactcca gtctccactt tagctggctc tacatgtgta aaactttctc tattgcaacc
 ctcctgccct gataaatcag ctctatccgg gtagtggata aaatgaaccc attgggcagt
 tacaTCAGTA ACCATGTGTC ACTCTACAGT GGGtttgttt tttttgccac agggtctcgc
 tctgttcagg ctggtatcac agctcactgc aacctccact tcctgggctc aagtgatcct
 cccacctcag cctcccgagt agctgggact acaggcacgc gccaccaggc ccagctaatt
 tttgtatttt tgtagagatg gggtttcacc atgttggcca ggctggtggt gtgacctcaa
 gcgatctgcc cgcctcagct tcccaaagtg ctgggattac aggtgtgagc caccgcgccc
 ggccAGGGTT TGTCTATATA TCCTTATATA GATATGTTAC TTGTAAAATG AGTTGCAATG
 TCTTGAGGAA TTGCTA

  Submitted Frequency for ss12992565 back to top
There is no frequency submission for ss12992565.


  dbSNP summary of Genotypes for ss12992565 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU116116G=0.92241377
A=0.07758620G/G=0.86206895
A/G=0.12068965
A/A=0.01724138
Pr(chiSq=1.426,df=1)
=0.251
Genotype
Freq.
HapMap-HCB
EAST ASIA
8484A=0.52380955
G=0.47619048A/G=0.47619048
A/A=0.28571430
G/G=0.23809524
Pr(chiSq=0.087,df=1)
=1.000
Genotype
Freq.
HapMap-JPT8080G=0.57499999
A=0.42500001A/G=0.44999999
G/G=0.34999999
A/A=0.20000000
Pr(chiSq=0.251,df=1)
=0.655
Genotype
Freq.
HapMap-YRI116116G=0.96551722
A=0.03448276G/G=0.93103451
A/G=0.06896552
Pr(chiSq=0.005,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss12992565 back to top
There is no individual genotype data for ss12992565.